Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/fbf91020dceafb523c9843e4b9a74a/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/fbf91020dceafb523c9843e4b9a74a/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/88/9711be98d2e5098018361c12afea05/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/fbf91020dceafb523c9843e4b9a74a/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/c051a650dddf755af46ac935fc6081/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/c051a650dddf755af46ac935fc6081/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-zmu1608l because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-01 21:56:21,601 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-01 21:56:22,480 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-01 21:56:22,652 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-01 21:56:23,648 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-01 21:56:23,818 - cnv_pipe.batch.run_model - INFO - Processing cluster 919 with 134 probes
2026-06-01 21:56:24,197 - cnv_pipe.batch.run_model.cluster919 - INFO - Child process started for cluster 919 with 134 probes
2026-06-01 21:57:09,334 - cnv_pipe.batch.run_model.cluster919 - INFO - Child process finished cluster 919. Wrote cluster_919_samples.csv and cluster_919_params.csv
2026-06-01 21:57:09,336 - cnv_pipe.batch.run_model - INFO - Cluster 919 finished in 45.52 seconds. Status: SUCCESS