Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/fbf91020dceafb523c9843e4b9a74a/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/fbf91020dceafb523c9843e4b9a74a/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/88/9711be98d2e5098018361c12afea05/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/fbf91020dceafb523c9843e4b9a74a/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ef/598e8dfed7788fb72803408eccfebf/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ef/598e8dfed7788fb72803408eccfebf/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-70735pb1 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-01 21:56:38,828 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-01 21:56:39,659 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-01 21:56:39,837 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-01 21:56:40,795 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-01 21:56:40,976 - cnv_pipe.batch.run_model - INFO - Processing cluster 1014 with 175 probes
2026-06-01 21:56:41,365 - cnv_pipe.batch.run_model.cluster1014 - INFO - Child process started for cluster 1014 with 175 probes
2026-06-01 21:57:32,114 - cnv_pipe.batch.run_model.cluster1014 - INFO - Child process finished cluster 1014. Wrote cluster_1014_samples.csv and cluster_1014_params.csv
2026-06-01 21:57:32,115 - cnv_pipe.batch.run_model - INFO - Cluster 1014 finished in 51.14 seconds. Status: SUCCESS