Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/fbf91020dceafb523c9843e4b9a74a/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/fbf91020dceafb523c9843e4b9a74a/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/88/9711be98d2e5098018361c12afea05/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/fbf91020dceafb523c9843e4b9a74a/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/b875e2e3ad44de2af64fbfe5dab4a4/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/b875e2e3ad44de2af64fbfe5dab4a4/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-9tw_itl1 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-01 21:55:52,229 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-01 21:55:53,109 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-01 21:55:53,293 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-01 21:55:54,307 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-01 21:55:54,503 - cnv_pipe.batch.run_model - INFO - Processing cluster 681 with 189 probes
2026-06-01 21:55:54,910 - cnv_pipe.batch.run_model.cluster681 - INFO - Child process started for cluster 681 with 189 probes
2026-06-01 21:56:51,734 - cnv_pipe.batch.run_model.cluster681 - INFO - Child process finished cluster 681. Wrote cluster_681_samples.csv and cluster_681_params.csv
2026-06-01 21:56:51,735 - cnv_pipe.batch.run_model - INFO - Cluster 681 finished in 57.23 seconds. Status: SUCCESS