File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/5bfd640bf5c36f19dee331a278b616/.command.log
Size
69.9 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_2;chr10_74133927-74134264.bed)
Attempt

Content

View in new tab 
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr10_74133927-74134264.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/5bfd640bf5c36f19dee331a278b616/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr10_74133927-74134264.bed.gz.tbi
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/a1c6d402d9a4ff79b37cba5f445f9c/Sig_18_tissue.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/a1c6d402d9a4ff79b37cba5f445f9c/Sig_18_tissue.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/5bfd640bf5c36f19dee331a278b616/.command.run
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-01T21:51:42.725589Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-01T21:51:42.729828Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-01T21:51:42.729867Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-01T21:51:42.729875Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-01T21:51:42.729880Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXJDyH2c'
[2026-06-01T21:51:42.729885Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-01T21:51:42.729891Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-01T21:51:42.729894Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-01T21:51:42.729898Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-01T21:51:42.729902Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-01T21:51:42.729905Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-01T21:51:42.729909Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-01T21:51:42.729912Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-01T21:51:42.729916Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-01T21:51:42.730930Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-01T21:51:42.731068Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-01T21:51:42.736951Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-01T21:51:42.737827Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-01T21:51:42.738088Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-01T21:51:42.738338Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-01T21:51:42.738694Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.739363Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.739455Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.739539Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.739667Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.739735Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.740028Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.740388Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.740564Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.740864Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.740953Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.741600Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.741985Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.744159Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.744677Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.745016Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-01T21:51:42.745213Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.745298Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.745429Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.745703Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.746061Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.746137Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.746269Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.746342Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.746461Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.746524Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.746678Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.746746Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.746857Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.746922Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.747055Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.747222Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.747607Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.747950Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.748703Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.749369Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.749749Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.749826Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.749950Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.750012Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.750125Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.750189Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.750326Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.750395Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.750505Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.750572Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.750733Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.750968Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.751460Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.751529Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.751647Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.751713Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.751830Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.751893Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.752005Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.752068Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.752181Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.752247Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.752357Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.752466Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.752805Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.753238Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.753357Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.753421Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.753530Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.753601Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.753708Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.753768Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.753879Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.753942Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.754050Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.754112Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.754234Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.754361Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.769872Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.769987Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.770070Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.770263Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.770341Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.770442Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.770527Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.770653Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.770724Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-01T21:51:42.770772Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-01T21:51:42.776154Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.776761Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.777073Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.777686Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.778405Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.781707Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.781886Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node
[2026-06-01T21:51:42.782879Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.784027Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.785041Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:51:42.790671Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-01T21:51:42.791592Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0002] Task initiated on local node
[2026-06-01T21:51:42.795828Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0007] Task initiated on local node
[2026-06-01T21:51:42.800229Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0004] Task initiated on local node
[2026-06-01T21:51:42.801920Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node
[2026-06-01T21:51:42.803475Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-01T21:51:42.804909Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-01T21:51:43.253771Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.254696Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.258307Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node
[2026-06-01T21:51:43.319271Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.320174Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.323673Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node
[2026-06-01T21:51:43.685877Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.686784Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.690282Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node
[2026-06-01T21:51:43.751487Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.752299Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.755049Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-01T21:51:43.816430Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.817245Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:43.820343Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node
[2026-06-01T21:51:44.082372Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.083250Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.086550Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0009] Task initiated on local node
[2026-06-01T21:51:44.147743Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.148749Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.152534Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node
[2026-06-01T21:51:44.414019Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.415058Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.418437Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-01T21:51:44.479532Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.480393Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.483726Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-01T21:51:44.484333Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.485031Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.488152Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0002] Task initiated on local node
[2026-06-01T21:51:44.517301Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.518213Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.521619Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node
[2026-06-01T21:51:44.522667Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.523403Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.526210Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node
[2026-06-01T21:51:44.587690Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.588701Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.591950Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0007] Task initiated on local node
[2026-06-01T21:51:44.653226Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.654088Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-01T21:51:44.657803Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-01T21:51:45.520708Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.520791Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.521812Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.522415Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.525871Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0004] Task initiated on local node
[2026-06-01T21:51:45.527502Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0011] Task initiated on local node
[2026-06-01T21:51:45.555011Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.555816Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.559149Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node
[2026-06-01T21:51:45.563983Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.564697Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.568158Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0006] Task initiated on local node
[2026-06-01T21:51:45.597117Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.597891Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.601236Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0001] Task initiated on local node
[2026-06-01T21:51:45.913473Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.914323Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.917608Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node
[2026-06-01T21:51:45.978796Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.979596Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:45.982769Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node
[2026-06-01T21:51:46.044217Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.045100Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.048665Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node
[2026-06-01T21:51:46.109555Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.110378Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.113696Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-01T21:51:46.174741Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.174844Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.175588Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.176206Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.180190Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0009] Task initiated on local node
[2026-06-01T21:51:46.181539Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-01T21:51:46.241198Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.241289Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.241988Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.242589Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.247101Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node
[2026-06-01T21:51:46.407358Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.408245Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.411732Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node
[2026-06-01T21:51:46.472688Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.473500Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.476920Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-01T21:51:46.538177Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.538975Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.542134Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node
[2026-06-01T21:51:46.603556Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.604346Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.607459Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node
[2026-06-01T21:51:46.668878Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.669668Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.673017Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0008] Task initiated on local node
[2026-06-01T21:51:46.784516Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.785274Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.789328Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node
[2026-06-01T21:51:46.849846Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.850652Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.854870Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-01T21:51:46.915258Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.915999Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-01T21:51:46.919548Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-01T21:51:47.030950Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.031619Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.035170Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0010] Task initiated on local node
[2026-06-01T21:51:47.247669Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.248663Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.252677Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-01T21:51:47.314147Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.315058Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.318847Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0005] Task initiated on local node
[2026-06-01T21:51:47.731495Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.732306Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-01T21:51:47.735989Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node
[2026-06-01T21:51:48.171344Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0000] Task initiated on local node
[2026-06-01T21:51:48.198713Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.199626Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.203726Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0003] Task initiated on local node
[2026-06-01T21:51:48.264886Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.265791Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.269698Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-01T21:51:48.330786Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.331581Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.335206Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-01T21:51:48.396634Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.397395Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.401285Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-01T21:51:48.462449Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.463266Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.467367Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node
[2026-06-01T21:51:48.496367Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.497589Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.498182Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.500983Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.503158Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0006] Task initiated on local node
[2026-06-01T21:51:48.504997Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-01T21:51:48.566719Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.566832Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.567496Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.567963Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.572433Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node
[2026-06-01T21:51:48.573620Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-01T21:51:48.633742Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.634435Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.638578Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-01T21:51:48.749762Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.750490Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.754918Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-01T21:51:48.866124Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.866941Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.871029Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-01T21:51:48.931988Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.932657Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.936549Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0008] Task initiated on local node
[2026-06-01T21:51:48.997716Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:48.998565Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.002901Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0001] Task initiated on local node
[2026-06-01T21:51:49.063687Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.064453Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.068650Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node
[2026-06-01T21:51:49.129728Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.130436Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.134047Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0011] Task initiated on local node
[2026-06-01T21:51:49.195378Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.196049Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.199827Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_009_chr10_0000] Task initiated on local node
[2026-06-01T21:51:49.212892Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.213580Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.216813Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0010] Task initiated on local node
[2026-06-01T21:51:49.278228Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.278352Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.278983Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.279384Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.283457Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-01T21:51:49.284611Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-01T21:51:49.312270Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.312368Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.312920Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.313234Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.317582Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0000] Task initiated on local node
[2026-06-01T21:51:49.318139Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0003] Task initiated on local node
[2026-06-01T21:51:49.322099Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.322187Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.354350Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.354446Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.418894Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.419441Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-01T21:51:49.423462Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node
[2026-06-01T21:51:49.484449Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.551679Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.552204Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.555426Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node
[2026-06-01T21:51:50.617008Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.681753Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.681861Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.682402Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.682794Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.686659Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-01T21:51:50.687579Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0005] Task initiated on local node
[2026-06-01T21:51:50.748348Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.748446Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.748751Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.748961Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.749486Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.750113Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.755524Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-01T21:51:50.757443Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-01T21:51:50.758627Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-01T21:51:50.783078Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.783474Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.787328Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-01T21:51:50.791833Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.791911Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.792174Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.795188Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-01T21:51:50.824331Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.827945Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.828317Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-01T21:51:50.831802Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-01T21:51:50.893031Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:53.314542Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-01T21:52:01.619146Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-01T21:52:01.619146Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] 
[2026-06-01T21:52:01.619146Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-01T21:52:01.619256Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] 
[2026-06-01T21:52:01.619275Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-01T21:52:01.619283Z] [nf-a45bfd640bf5c36f19dee331a278b616-19bb1-qbffs] [591_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec