cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample Sig_18_tissue --normal_sample reference-NA12878 --max_event_count 5 -v positive_somatic_control_2.tnseq.vcf.gz --contamination positive_somatic_control_2.tnseq.contamination_data.tsv --tumor_segments positive_somatic_control_2.tnseq.segments --orientation_priors positive_somatic_control_2.tnseq.orientation_data.tsv positive_somatic_control_2.tnseq.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:212000001, elapsed 0.0s, est remaining 0.8s, peak mem 285MB, user 0.2s, sys 0.9s, output queue size 58
progress 10% @chr2:105000001, elapsed 0.1s, est remaining 0.6s, peak mem 285MB, user 0.4s, sys 3.0s, output queue size 218
progress 15% @chr3:17000001, elapsed 0.1s, est remaining 0.5s, peak mem 285MB, user 0.6s, sys 5.2s, output queue size 380
progress 20% @chr3:177000001, elapsed 0.1s, est remaining 0.4s, peak mem 285MB, user 0.7s, sys 7.3s, output queue size 535
progress 25% @chr1:173000001, elapsed 0.1s, est remaining 0.4s, peak mem 285MB, user 0.8s, sys 9.5s, output queue size 696
progress 30% @chr5:118000001, elapsed 0.2s, est remaining 0.4s, peak mem 285MB, user 1.0s, sys 11.5s, output queue size 788
progress 35% @chr6:100000001, elapsed 0.2s, est remaining 0.3s, peak mem 285MB, user 1.1s, sys 13.7s, output queue size 937
progress 40% @chr7:85000001, elapsed 0.2s, est remaining 0.3s, peak mem 285MB, user 1.2s, sys 15.8s, output queue size 405
progress 45% @chr8:71000001, elapsed 0.2s, est remaining 0.3s, peak mem 285MB, user 1.4s, sys 18.0s, output queue size 568
progress 50% @chr9:79000001, elapsed 0.2s, est remaining 0.2s, peak mem 285MB, user 1.5s, sys 20.2s, output queue size 729
progress 55% @chr10:39000001, elapsed 0.3s, est remaining 0.2s, peak mem 285MB, user 1.7s, sys 22.3s, output queue size 890
progress 60% @chr12:40000001, elapsed 0.3s, est remaining 0.2s, peak mem 285MB, user 1.8s, sys 24.3s, output queue size 1052
progress 65% @chr13:54000001, elapsed 0.3s, est remaining 0.2s, peak mem 285MB, user 2.0s, sys 26.2s, output queue size 1214
progress 70% @chr13:99000001, elapsed 0.3s, est remaining 0.1s, peak mem 285MB, user 2.1s, sys 28.2s, output queue size 1375
progress 75% @chr16:86000001, elapsed 0.4s, est remaining 0.1s, peak mem 285MB, user 2.2s, sys 29.6s, output queue size 1538
progress 80% @chr18:59000001, elapsed 0.4s, est remaining 0.1s, peak mem 285MB, user 2.2s, sys 31.4s, output queue size 1700
progress 85% @chr20:53000001, elapsed 0.4s, est remaining 0.1s, peak mem 285MB, user 2.4s, sys 33.5s, output queue size 1862
progress 90% @chrX:52000001, elapsed 0.5s, est remaining 0.1s, peak mem 285MB, user 2.6s, sys 35.5s, output queue size 2023
progress 95% @chrY:14000001, elapsed 0.5s, est remaining 0.0s, peak mem 285MB, user 2.8s, sys 37.7s, output queue size 2317
progress 100% @HLA-DRB1*14:05:01:1, elapsed 0.6s, est remaining 0.0s, peak mem 286MB, user 2.9s, sys 44.1s, output queue size 5609
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
signature: 000606a6
features: 1f8bfbff fffa320b
extended: f1bf07ab 00407f5a
amd bits: 2c100800 00000121
brand: Intel(R) Xeon(R) Platinum 8375C CPU @ 2.90GHz
threads: 128 max 128
algo: TNfilter
license: sentieon:TNhaplotyper=128
input file size: 53230
output file size: 44181
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 561 calls 0.006 user 0.000 sys 0.017 real
"predict_filter": 187 calls 0.010 user 0.000 sys 0.032 real
advance: 3219322 calls 0.652 user 18.453 sys 20.942 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.001 user 0.001 sys 0.689 real
fetch_ref: 476 calls 0.009 user 0.003 sys 0.027 real
idle: 19865 calls 0.462 user 0.169 sys 186.885 real
init: 1 calls 0.178 user 0.088 sys 0.422 real
overall: 300335104 mem 4.462 user 46.752 sys 2.151 real