File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/76/7b3a920661ab251c711a3c0cfe52f7/.command.err
Size
60.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_1;chr9_110971973-110972217.bed)
Attempt

Content

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[2026-06-01T21:51:59.929300Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-01T21:51:59.930341Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-01T21:51:59.930358Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-01T21:51:59.930362Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-01T21:51:59.930367Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXdtoUWE'
[2026-06-01T21:51:59.930371Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-01T21:51:59.930376Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-01T21:51:59.930380Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-01T21:51:59.930383Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-01T21:51:59.930387Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-01T21:51:59.930390Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-01T21:51:59.930394Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-01T21:51:59.930398Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-01T21:51:59.930402Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-01T21:51:59.930904Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-01T21:51:59.931014Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-01T21:51:59.937255Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-01T21:51:59.937983Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-01T21:51:59.938207Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-01T21:51:59.938658Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-01T21:51:59.939195Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.940140Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.940314Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.940757Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.941419Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.941627Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.941907Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-01T21:51:59.942177Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.942293Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.942739Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.943277Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.946203Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.946452Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.947167Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-01T21:51:59.947371Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.947768Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.947953Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.948024Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.948135Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.948217Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.948441Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.948509Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.948626Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.948695Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.948807Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.948869Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.950205Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.950553Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.951027Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.951364Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.951491Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.951561Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.951686Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.951750Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.951880Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.951949Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.952072Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.952137Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.952274Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.952341Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.952613Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.952786Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.953210Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.953974Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.954652Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.954769Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.954911Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.954984Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.955214Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.955285Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.955403Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.955823Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.956490Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.956574Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.956701Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.956765Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.956882Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.956951Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.957069Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.957135Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.957254Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.957317Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.958071Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.958647Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.973169Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.973332Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.973429Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.973628Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.973707Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.973796Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.973867Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.973983Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.974054Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-01T21:51:59.974114Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-01T21:51:59.995592Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-01T21:51:59.996551Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-01T21:51:59.998802Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-01T21:51:59.999576Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:52:00.000459Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-01T21:52:00.001134Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-01T21:52:00.002003Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:52:00.003540Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:52:00.004738Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-01T21:52:00.008972Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-06-01T21:52:00.014628Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-06-01T21:52:00.015174Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-06-01T21:52:00.022327Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-06-01T21:52:00.026883Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-06-01T21:52:00.028481Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-06-01T21:52:00.029889Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-06-01T21:52:00.121927Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:00.122037Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:00.122910Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:52:00.123438Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:52:00.128597Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-06-01T21:52:00.129943Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-06-01T21:52:00.239144Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:00.240073Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:52:00.244617Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-06-01T21:52:00.706773Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:00.707635Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:52:00.711586Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-06-01T21:52:00.772570Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:00.773427Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:52:00.777179Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-06-01T21:52:00.888450Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:00.889344Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:52:00.893256Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-06-01T21:52:01.204668Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.205897Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.209996Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-06-01T21:52:01.371117Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.372764Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.376274Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-06-01T21:52:01.437349Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.438725Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.442469Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-06-01T21:52:01.503571Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.504831Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.508583Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-06-01T21:52:01.920870Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.922422Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.925934Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-06-01T21:52:01.986778Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.987996Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:52:01.992175Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-06-01T21:52:02.053474Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.054783Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.058306Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-06-01T21:52:02.220045Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.221547Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.224795Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-06-01T21:52:02.286094Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.286205Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.287382Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.287888Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.292586Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-06-01T21:52:02.293043Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-06-01T21:52:02.304314Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.305368Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.308981Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-06-01T21:52:02.321849Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.322899Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.326227Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-06-01T21:52:02.355328Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.356376Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.359660Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-06-01T21:52:02.372710Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.373804Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.377211Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-06-01T21:52:02.438202Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.439417Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.442631Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-06-01T21:52:02.503901Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.505027Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.508598Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-06-01T21:52:02.670150Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.671347Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.674899Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-06-01T21:52:02.735933Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.736941Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.740936Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-06-01T21:52:02.801641Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.802603Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.805947Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-06-01T21:52:02.866908Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.867052Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.867998Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.868563Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.872504Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-06-01T21:52:02.874254Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-06-01T21:52:02.933407Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.934627Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.938414Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-06-01T21:52:02.999289Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:02.999387Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.000355Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.000814Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.004555Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-06-01T21:52:03.038046Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-06-01T21:52:03.065712Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.065830Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.066599Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.067033Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.071065Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-06-01T21:52:03.071733Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-06-01T21:52:03.131981Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.132086Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.132820Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.133153Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.136989Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-06-01T21:52:03.138329Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-06-01T21:52:03.198420Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.199198Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.202939Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-06-01T21:52:03.514754Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.515522Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.519205Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-06-01T21:52:03.580189Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.581135Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.584904Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-06-01T21:52:03.796307Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.796449Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.797230Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.797735Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.801817Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-06-01T21:52:03.802614Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-06-01T21:52:03.841677Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-06-01T21:52:03.862653Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.862757Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.862815Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.862860Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.863591Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.863986Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.864615Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.865317Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.869840Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-06-01T21:52:03.871760Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-06-01T21:52:03.873635Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-06-01T21:52:03.874191Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-06-01T21:52:03.933702Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.933796Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.933828Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.933856Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.934556Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.935022Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.935475Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.936098Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:52:03.940695Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-06-01T21:52:03.943541Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-06-01T21:52:03.945300Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-06-01T21:52:03.946315Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-06-01T21:52:04.002088Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.002168Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.002208Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.002245Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.003079Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.003775Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.004555Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.007341Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-06-01T21:52:04.007626Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.012002Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-06-01T21:52:04.012251Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-06-01T21:52:04.049252Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-06-01T21:52:04.072699Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.072799Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.072835Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.072869Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.538281Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.538842Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.542056Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-06-01T21:52:04.542854Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.543301Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.546347Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-06-01T21:52:04.607420Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.607518Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.822417Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.823052Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.826141Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-06-01T21:52:04.887691Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.887776Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.888187Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.891848Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-06-01T21:52:04.953060Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.960939Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.961506Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.962417Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.964029Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:52:04.967373Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-01T21:52:04.970697Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-01T21:52:05.000580Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:05.000904Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:52:05.004185Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-01T21:52:05.005240Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-01T21:52:05.008997Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:05.009061Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:05.009334Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-01T21:52:05.012500Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-01T21:52:05.041754Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:05.049200Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:05.049428Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-01T21:52:05.052879Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-01T21:52:05.114115Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-01T21:52:05.579066Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-01T21:52:10.455323Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-01T21:52:10.455323Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] 
[2026-06-01T21:52:10.455323Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-01T21:52:10.455400Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] 
[2026-06-01T21:52:10.455410Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-01T21:52:10.455419Z] [nf-767b3a920661ab251c711a3c0cfe52f7-25911-mqtc5] [606_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec