Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/fbf91020dceafb523c9843e4b9a74a/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/fbf91020dceafb523c9843e4b9a74a/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/88/9711be98d2e5098018361c12afea05/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/fbf91020dceafb523c9843e4b9a74a/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/24/6e1b0e4de65dc9584a625329f3ed99/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/24/6e1b0e4de65dc9584a625329f3ed99/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-kl41k4y4 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-01 21:56:41,917 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-01 21:56:42,703 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-01 21:56:42,872 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-01 21:56:43,847 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-01 21:56:44,010 - cnv_pipe.batch.run_model - INFO - Processing cluster 801 with 177 probes
2026-06-01 21:56:44,384 - cnv_pipe.batch.run_model.cluster801 - INFO - Child process started for cluster 801 with 177 probes
2026-06-01 21:57:36,992 - cnv_pipe.batch.run_model.cluster801 - INFO - Child process finished cluster 801. Wrote cluster_801_samples.csv and cluster_801_params.csv
2026-06-01 21:57:36,993 - cnv_pipe.batch.run_model - INFO - Cluster 801 finished in 52.98 seconds. Status: SUCCESS