Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr9_110971973-110972217.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/c9e2697a659bed6ea0dbd22ba65779/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/c9e2697a659bed6ea0dbd22ba65779/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/f2b19ea24476199183849c3fbd492f/Sig_18_Blood.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr9_110971973-110972217.bed.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/f2b19ea24476199183849c3fbd492f/Sig_18_Blood.recalibrated.bam
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-03T20:58:27.033199Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-03T20:58:27.055569Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-03T20:58:27.055594Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-03T20:58:27.055600Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-03T20:58:27.055604Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXX8wmxVi'
[2026-06-03T20:58:27.055608Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-03T20:58:27.055612Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-03T20:58:27.055616Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-03T20:58:27.055620Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-03T20:58:27.055623Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-03T20:58:27.055627Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-03T20:58:27.055630Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-03T20:58:27.055634Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-03T20:58:27.055637Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-03T20:58:27.056333Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-03T20:58:27.056426Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-03T20:58:27.062258Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-03T20:58:27.062938Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-03T20:58:27.063118Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-03T20:58:27.063404Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-03T20:58:27.063654Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.064393Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.064481Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.064573Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.064698Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.064904Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.065250Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.065308Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.065426Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.065782Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.066076Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.066582Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.067829Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.068008Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.068096Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.068238Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-03T20:58:27.068399Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.068467Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.068790Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.069022Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.069210Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.069280Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.069389Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.069454Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.069561Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.069624Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.070034Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.070285Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.070720Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.070982Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.071096Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.071183Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.071294Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.071355Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.071463Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.071527Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.071633Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.071697Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.071806Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.071874Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.071987Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.072114Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.072841Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.072950Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.073102Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.073170Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.073289Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.073426Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.073569Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.073692Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.074087Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.074480Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.075041Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.075496Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.075637Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.075703Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.075815Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.075882Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.075992Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.076057Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.076166Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.076228Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.076339Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.076404Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.091045Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.091326Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.091905Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.092182Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.092368Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.092944Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.093039Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.093222Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.093313Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.093613Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.093777Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.095245Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.095528Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T20:58:27.095776Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-03T20:58:27.096516Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.097326Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.097905Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.098875Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.099974Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.101612Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-06-03T20:58:27.105471Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-06-03T20:58:27.111031Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-06-03T20:58:27.113044Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-06-03T20:58:27.113275Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-06-03T20:58:27.118061Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-06-03T20:58:27.118442Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-06-03T20:58:27.118702Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-06-03T20:58:27.232070Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.232802Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.235605Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-06-03T20:58:27.297028Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.297859Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.300574Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-06-03T20:58:27.512331Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.513103Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.515711Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-06-03T20:58:27.577573Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.578343Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.581229Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-06-03T20:58:27.943271Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.944075Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.947109Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-06-03T20:58:27.976284Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.977096Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.979918Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-06-03T20:58:28.141460Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.142179Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.145124Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-06-03T20:58:28.150095Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.150877Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.153676Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-06-03T20:58:28.182759Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.183472Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.186227Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-06-03T20:58:28.187050Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.187671Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.190159Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-06-03T20:58:28.251928Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.252706Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.255146Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-06-03T20:58:28.284657Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.285374Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.288196Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-06-03T20:58:28.399725Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.400531Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.403106Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-06-03T20:58:28.464894Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.464983Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.465647Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.466113Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.469643Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-06-03T20:58:28.470001Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-06-03T20:58:28.531389Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.531482Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.531506Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.532139Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.532523Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.532947Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.535787Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-06-03T20:58:28.537123Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-06-03T20:58:28.538073Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-06-03T20:58:28.565210Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.565291Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.565339Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.566232Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.566633Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.566994Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.569077Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.572693Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-06-03T20:58:28.574892Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.575881Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-06-03T20:58:28.576923Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-06-03T20:58:28.578936Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-06-03T20:58:28.690405Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.691227Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.693993Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-06-03T20:58:28.855446Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.856058Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.858744Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-06-03T20:58:28.888030Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.888673Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.891466Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-06-03T20:58:28.920748Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.921396Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.924165Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-06-03T20:58:28.985834Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.986676Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.989569Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-06-03T20:58:29.050679Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.050763Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.051337Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.051722Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.054830Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-06-03T20:58:29.055495Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-06-03T20:58:29.116131Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.116217Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.116803Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.117131Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.119819Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-06-03T20:58:29.120843Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-06-03T20:58:29.133057Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.133594Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.135905Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-06-03T20:58:29.149297Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.149836Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.151923Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-06-03T20:58:29.165567Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.166088Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.168907Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-06-03T20:58:29.169790Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.170220Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.172539Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-06-03T20:58:29.185955Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.186469Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.189493Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-06-03T20:58:29.202431Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.202501Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.202940Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.203347Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.205894Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-06-03T20:58:29.207022Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-06-03T20:58:29.236607Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.236674Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.237120Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.237354Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.239984Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-06-03T20:58:29.240739Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-06-03T20:58:29.269608Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.270167Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.272629Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-06-03T20:58:29.301964Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.302029Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.302496Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.302768Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.305775Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-06-03T20:58:29.306463Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-06-03T20:58:29.335018Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.335093Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.335658Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.335989Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.338679Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-06-03T20:58:29.344356Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.345013Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.347445Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-06-03T20:58:29.360841Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.361316Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.363859Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-06-03T20:58:29.376973Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.377453Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.379497Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-06-03T20:58:29.379718Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-06-03T20:58:29.380984Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.381041Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.381441Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.381838Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.384403Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-06-03T20:58:29.385138Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-06-03T20:58:29.398237Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.398647Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.400875Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-06-03T20:58:29.406185Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.413763Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.415168Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.431176Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.745525Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.745918Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.748580Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-06-03T20:58:29.777947Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.992339Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.992411Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.992788Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.993093Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.996016Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-06-03T20:58:29.996928Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-06-03T20:58:30.024901Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.024968Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.790415Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.790849Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.792988Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-06-03T20:58:30.822559Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.822802Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.822923Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.823163Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.823806Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.826840Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-03T20:58:30.828100Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-03T20:58:30.828935Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-03T20:58:30.856309Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.856366Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.856389Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.856593Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.856874Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.859528Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-03T20:58:30.860256Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-03T20:58:30.888842Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.888895Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.889061Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.891129Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-03T20:58:30.920812Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:32.737702Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-03T20:58:37.611120Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-03T20:58:37.611120Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] 
[2026-06-03T20:58:37.611120Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-03T20:58:37.611174Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] 
[2026-06-03T20:58:37.611180Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-03T20:58:37.611186Z] [nf-b1c9e2697a659bed6ea0dbd22ba65779-c8d09-d2gx5] [629_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec