File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/75/0f3999b2d6fc942e8090345e2ce7e5/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-rwovocnr because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 21:03:11,307 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 21:03:12,157 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 21:03:12,331 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 21:03:13,319 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-03 21:03:13,490 - cnv_pipe.batch.run_model - INFO - Processing cluster 996 with 176 probes
2026-06-03 21:03:13,861 - cnv_pipe.batch.run_model.cluster996 - INFO - Child process started for cluster 996 with 176 probes
2026-06-03 21:04:05,209 - cnv_pipe.batch.run_model.cluster996 - INFO - Child process finished cluster 996. Wrote cluster_996_samples.csv and cluster_996_params.csv
2026-06-03 21:04:05,211 - cnv_pipe.batch.run_model - INFO - Cluster 996 finished in 51.72 seconds. Status: SUCCESS