cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample HCC1395_BL --normal_sample reference-NA12878 --max_event_count 5 -v negative_somatic_control_1.tnseq.vcf.gz --contamination negative_somatic_control_1.tnseq.contamination_data.tsv --tumor_segments negative_somatic_control_1.tnseq.segments --orientation_priors negative_somatic_control_1.tnseq.orientation_data.tsv negative_somatic_control_1.tnseq.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:154000001, elapsed 0.1s, est remaining 1.0s, peak mem 420MB, user 0.1s, sys 2.2s, output queue size 136
progress 10% @chr2:1, elapsed 0.1s, est remaining 0.9s, peak mem 420MB, user 0.3s, sys 6.3s, output queue size 237
progress 15% @chr2:231000001, elapsed 0.1s, est remaining 0.7s, peak mem 420MB, user 0.5s, sys 12.7s, output queue size 399
progress 20% @chr3:153000001, elapsed 0.2s, est remaining 0.7s, peak mem 420MB, user 0.8s, sys 18.6s, output queue size 272
progress 25% @chr4:123000001, elapsed 0.2s, est remaining 0.6s, peak mem 420MB, user 1.0s, sys 25.3s, output queue size 433
progress 30% @chr5:86000001, elapsed 0.2s, est remaining 0.5s, peak mem 420MB, user 1.4s, sys 31.4s, output queue size 594
progress 35% @chr6:122000001, elapsed 0.3s, est remaining 0.5s, peak mem 420MB, user 1.8s, sys 36.6s, output queue size 755
progress 40% @chr6:160000001, elapsed 0.3s, est remaining 0.5s, peak mem 420MB, user 2.1s, sys 41.0s, output queue size 917
progress 45% @chr7:41000001, elapsed 0.3s, est remaining 0.4s, peak mem 420MB, user 2.4s, sys 47.7s, output queue size 1079
progress 50% @chr9:93000001, elapsed 0.4s, est remaining 0.4s, peak mem 420MB, user 2.8s, sys 53.6s, output queue size 1240
progress 55% @chr9:106000001, elapsed 0.4s, est remaining 0.3s, peak mem 420MB, user 3.3s, sys 59.3s, output queue size 1401
progress 60% @chr11:128000001, elapsed 0.4s, est remaining 0.3s, peak mem 420MB, user 3.7s, sys 64.7s, output queue size 1563
progress 65% @chr12:110000001, elapsed 0.5s, est remaining 0.3s, peak mem 420MB, user 4.2s, sys 69.6s, output queue size 1725
progress 70% @chr14:70000001, elapsed 0.5s, est remaining 0.2s, peak mem 420MB, user 4.6s, sys 75.6s, output queue size 218
progress 75% @chr16:22000001, elapsed 0.5s, est remaining 0.2s, peak mem 420MB, user 5.1s, sys 81.2s, output queue size 380
progress 80% @chr18:16000001, elapsed 0.6s, est remaining 0.1s, peak mem 420MB, user 5.7s, sys 86.8s, output queue size 542
progress 85% @chr20:24000001, elapsed 0.6s, est remaining 0.1s, peak mem 420MB, user 6.1s, sys 92.3s, output queue size 704
progress 90% @chrX:45000001, elapsed 0.6s, est remaining 0.1s, peak mem 420MB, user 6.6s, sys 97.4s, output queue size 866
progress 95% @chr8_KI270810v1_alt:1, elapsed 0.7s, est remaining 0.0s, peak mem 420MB, user 6.9s, sys 102.2s, output queue size 1276
progress 100% @HLA-DQB1*02:02:01:1, elapsed 0.7s, est remaining 0.0s, peak mem 421MB, user 7.2s, sys 113.9s, output queue size 4451
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
signature: 000a06d1
features: 1f8bfbff fffab20b
extended: f1bf27eb 1b407f7e
amd bits: 2c100800 00000121
brand: Intel(R) Xeon(R) 6975P-C
threads: 192 max 192
algo: TNfilter
license: sentieon:TNhaplotyper=192
input file size: 46614
output file size: 40483
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 408 calls 0.000 user 0.000 sys 0.009 real
"predict_filter": 136 calls 0.000 user 0.023 sys 0.028 real
advance: 3219322 calls 0.476 user 44.581 sys 54.210 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.004 user 0.003 sys 0.795 real
fetch_ref: 384 calls 0.001 user 0.044 sys 0.054 real
idle: 20057 calls 0.540 user 0.780 sys 295.480 real
init: 1 calls 0.215 user 0.100 sys 0.492 real
overall: 442257408 mem 8.651 user 118.510 sys 2.389 real