File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/7fc3d5acd47beb17dcd7b5b75ffdb6/.command.err
Size
62.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_1;chr19_15162349-15162662.bed)
Attempt

Content

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[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXivjtd9/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXivjtd9/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXivjtd9/chr19_15162349-15162662.bed.gz.tbi
[2026-06-03T20:58:21.531399Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-03T20:58:21.543632Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-03T20:58:21.543658Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-03T20:58:21.543664Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-03T20:58:21.543668Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXivjtd9'
[2026-06-03T20:58:21.543672Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-03T20:58:21.543676Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-03T20:58:21.543680Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-03T20:58:21.543684Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-03T20:58:21.543687Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-03T20:58:21.543691Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-03T20:58:21.543694Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-03T20:58:21.543698Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-03T20:58:21.543702Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-03T20:58:21.544303Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-03T20:58:21.544416Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-03T20:58:21.550113Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-03T20:58:21.550929Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-03T20:58:21.551115Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-03T20:58:21.551273Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-03T20:58:21.551541Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.551878Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.551970Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.552041Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.552155Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.552220Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.552336Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.552396Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.552511Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.552574Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.552885Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.553215Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.553362Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.553575Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.553647Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.553756Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.553938Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.554096Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.554290Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.555066Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.555508Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.557122Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.557236Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.557429Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-03T20:58:21.557622Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.557692Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.557804Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.557923Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.558209Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.558480Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.558594Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.558661Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.558777Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.558842Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.558950Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.559015Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.559126Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.559191Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.559309Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.559370Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.559488Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.559653Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.560102Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.560166Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.560781Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.560843Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.560957Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.561018Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.561276Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.561429Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.561915Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.562191Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.562651Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.562822Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.563395Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.563811Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.563926Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.563992Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.564100Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.564164Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.564276Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.564337Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.564448Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.564510Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.564622Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.564690Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.579408Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.579823Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.579893Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.580059Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.580130Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.580217Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.580283Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.580392Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.580462Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.581741Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-03T20:58:21.582020Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.582909Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.583241Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.583771Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.584365Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.585242Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.586070Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.587153Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.588342Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.594070Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-06-03T20:58:21.594671Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-03T20:58:21.597602Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-06-03T20:58:21.599736Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-03T20:58:21.603633Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-03T20:58:21.605940Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-06-03T20:58:21.607539Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-06-03T20:58:21.608211Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-06-03T20:58:21.655801Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.656491Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.659317Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-03T20:58:21.664098Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.664689Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.667792Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-06-03T20:58:21.929550Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.930387Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.933584Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-03T20:58:21.994882Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.995738Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.998677Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-06-03T20:58:22.762015Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.762112Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.762925Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.763227Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.767188Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-06-03T20:58:22.767402Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-06-03T20:58:23.028747Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.028855Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.029803Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.030216Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.033152Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-03T20:58:23.034038Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-03T20:58:23.062308Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.062401Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.063410Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.063895Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.066812Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-06-03T20:58:23.068519Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-06-03T20:58:23.096091Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.096814Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.099430Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-03T20:58:23.411799Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.412909Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.416041Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-06-03T20:58:23.445137Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.445204Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.445884Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.446651Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.449846Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-06-03T20:58:23.450728Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-06-03T20:58:23.479199Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.479928Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.482529Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-06-03T20:58:23.511870Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.511950Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.512655Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.513021Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.516510Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-06-03T20:58:23.517558Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-06-03T20:58:23.578106Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.579121Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.582125Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-06-03T20:58:24.394947Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.395135Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.396358Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.396714Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.397385Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.400319Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.400567Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-06-03T20:58:24.403707Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-03T20:58:24.404851Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-03T20:58:24.432815Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.433683Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.436710Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-03T20:58:24.465558Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.465642Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.466531Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.466832Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.469729Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-06-03T20:58:24.470240Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-06-03T20:58:24.498868Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.499792Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.502284Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-06-03T20:58:24.507609Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.508416Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.510985Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-06-03T20:58:24.540300Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.541182Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.543907Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-06-03T20:58:24.573054Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.573933Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.576487Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-06-03T20:58:24.605819Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.605911Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.606744Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.607082Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.610002Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-03T20:58:24.610815Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-06-03T20:58:24.640627Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.641251Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.644048Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-03T20:58:24.657052Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.657677Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.660386Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-06-03T20:58:24.673820Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.674084Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.674644Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.674985Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.677596Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-03T20:58:24.680108Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-06-03T20:58:24.693659Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.694232Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.696790Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-06-03T20:58:24.710220Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.710836Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.713575Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-03T20:58:24.742735Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.743384Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.746206Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-03T20:58:24.775422Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.776036Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.778816Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-06-03T20:58:24.940491Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.941129Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.944013Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-06-03T20:58:25.055455Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.056089Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.058950Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-03T20:58:25.088081Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.088685Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.091549Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-06-03T20:58:25.203137Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.203732Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.206542Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-03T20:58:25.235793Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.236395Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.239040Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-06-03T20:58:25.300676Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.301289Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.304217Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-03T20:58:25.365435Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.366072Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.369031Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-06-03T20:58:25.398186Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.398758Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.401606Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-06-03T20:58:25.430877Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.431440Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.434583Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-03T20:58:25.463392Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.463476Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.463974Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.464233Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.467216Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-06-03T20:58:25.468464Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-06-03T20:58:25.496756Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.497291Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.500053Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-03T20:58:25.529314Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.894368Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.894898Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.897473Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-06-03T20:58:25.926891Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.091317Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.091824Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.094383Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-06-03T20:58:26.123760Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.689605Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.690139Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.692825Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-06-03T20:58:26.722042Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.722123Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.722538Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.725087Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-06-03T20:58:26.786692Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.001352Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.001808Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.004443Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-06-03T20:58:27.033768Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.348799Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.349332Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.351711Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-06-03T20:58:27.381204Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.795964Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.796411Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.798911Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-03T20:58:27.828300Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.828543Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.828670Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.828943Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.829133Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.831437Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-03T20:58:27.833556Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-03T20:58:27.834632Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-03T20:58:27.861100Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.861167Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.861188Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.861383Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.861737Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.864214Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-03T20:58:27.864497Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-03T20:58:27.893954Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.894031Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.894204Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.896389Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-03T20:58:27.926194Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:32.150867Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-03T20:58:40.432078Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-03T20:58:40.432078Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] 
[2026-06-03T20:58:40.432078Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-03T20:58:40.432143Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] 
[2026-06-03T20:58:40.432149Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-03T20:58:40.432155Z] [nf-ac7fc3d5acd47beb17dcd7b5b75ffdb6-ecdf3-h7976] [620_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec