cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_Blood.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz Sig_18_Blood.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119922603, elapsed 0.0s, est remaining 0.7s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 4570
progress 10% @chr2:19966724, elapsed 0.1s, est remaining 0.6s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 14601
progress 15% @chr2:189039272, elapsed 0.1s, est remaining 0.6s, peak mem 165MB, user 0.0s, sys 0.0s, output queue size 6722
progress 20% @chr3:97871842, elapsed 0.1s, est remaining 0.5s, peak mem 165MB, user 0.0s, sys 0.0s, output queue size 17199
progress 25% @chr4:88457270, elapsed 0.2s, est remaining 0.5s, peak mem 165MB, user 0.0s, sys 0.0s, output queue size 27455
progress 30% @chr5:147375090, elapsed 0.2s, est remaining 0.5s, peak mem 165MB, user 0.0s, sys 0.0s, output queue size 37495
progress 35% @chr6:127119291, elapsed 0.2s, est remaining 0.4s, peak mem 165MB, user 0.0s, sys 0.0s, output queue size 47462
progress 40% @chr7:128754529, elapsed 0.3s, est remaining 0.4s, peak mem 165MB, user 0.0s, sys 0.0s, output queue size 56931
progress 45% @chr9:1056216, elapsed 0.3s, est remaining 0.4s, peak mem 282MB, user 0.0s, sys 0.0s, output queue size 66305
progress 50% @chr10:32305772, elapsed 0.3s, est remaining 0.3s, peak mem 297MB, user 0.0s, sys 0.0s, output queue size 6790
progress 55% @chr11:48306223, elapsed 0.4s, est remaining 0.3s, peak mem 306MB, user 0.0s, sys 0.0s, output queue size 17258
progress 60% @chr12:21864439, elapsed 0.4s, est remaining 0.3s, peak mem 306MB, user 0.0s, sys 0.0s, output queue size 26804
progress 65% @chr13:49191015, elapsed 0.4s, est remaining 0.2s, peak mem 306MB, user 0.0s, sys 0.0s, output queue size 37858
progress 70% @chr15:42684116, elapsed 0.5s, est remaining 0.2s, peak mem 306MB, user 0.0s, sys 0.0s, output queue size 47890
progress 75% @chr16:30756804, elapsed 0.5s, est remaining 0.2s, peak mem 306MB, user 0.0s, sys 0.0s, output queue size 57456
progress 80% @chr17:42543028, elapsed 0.5s, est remaining 0.1s, peak mem 306MB, user 0.0s, sys 0.0s, output queue size 68145
progress 85% @chr19:5648989, elapsed 0.6s, est remaining 0.1s, peak mem 333MB, user 0.0s, sys 0.0s, output queue size 78564
progress 90% @chr19:55500490, elapsed 0.6s, est remaining 0.1s, peak mem 333MB, user 0.0s, sys 0.0s, output queue size 88054
progress 95% @chr22:36937342, elapsed 0.9s, est remaining 0.0s, peak mem 2533MB, user 6.3s, sys 1.6s, output queue size 3221
progress 100% @chrY:57084632, elapsed 1.0s, est remaining 0.0s, peak mem 2533MB, user 6.4s, sys 1.7s, output queue size 6500
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
input file size: 52290597
reads: 1001133
contig: 201779 intervals 37922265 bases
advance: 208647 calls 1.832 user 0.051 sys 2.107 real
done: 1 calls 0.273 user 0.099 sys 0.381 real
execute: 1 calls 0.003 user 0.011 sys 0.990 real
fetch_reads: 208647 calls 0.037 user 0.000 sys 0.143 real
fetch_ref: 2072 calls 0.007 user 0.001 sys 0.023 real
fetch_vcf: 2072 calls 0.703 user 0.019 sys 0.932 real
idle: 90 calls 0.002 user 0.002 sys 31.616 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 2257 calls 4.606 user 1.551 sys 6.909 real
overall: 2656792576 mem 9.431 user 15.365 sys 2.354 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory