.command.log - Workdir - DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:VCF_SOMATIC_SNV_INDEL:BCFTOOLS_CONCAT (negative_somatic_control_1)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/2d7e6f8ce02866d0624a090ff5a4b6/.command.log
Size: 1.0 KB
Task: DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:VCF_SOMATIC_SNV_INDEL:BCFTOOLS_CONCAT (negative_somatic_control_1)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a1/c671c6740749f2fdec5a7ca04d4ec5/negative_somatic_control_1.snv_indel.tnseq.snv.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/e22d91274f2e6fdc8ccd9b36667e23/negative_somatic_control_1.snv_indel.strelka.indel.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/2d7e6f8ce02866d0624a090ff5a4b6/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/2d7e6f8ce02866d0624a090ff5a4b6/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a1/c671c6740749f2fdec5a7ca04d4ec5/negative_somatic_control_1.snv_indel.tnseq.snv.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/e22d91274f2e6fdc8ccd9b36667e23/negative_somatic_control_1.snv_indel.strelka.indel.vcf.gz.tbi
==> STAGING COMPLETE (6 inputs)

Checking the headers and starting positions of 2 files
ls: negative_somatic_control_1.snv_indel.merged.vcf.gz.csi: No such file or directory