.command.log - Workdir - DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr6_138229684-138229952.bed)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/40b07f9a5449227b18a2c2f8895ccd/.command.log
Size: 102.5 KB
Task: DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr6_138229684-138229952.bed)
Attempt
Content

  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/40b07f9a5449227b18a2c2f8895ccd/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr6_138229684-138229952.bed.gz.tbi
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/40b07f9a5449227b18a2c2f8895ccd/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/f2b19ea24476199183849c3fbd492f/Sig_18_Blood.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/f2b19ea24476199183849c3fbd492f/Sig_18_Blood.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr6_138229684-138229952.bed.gz
==> STAGING COMPLETE (10 inputs)

[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXnzEs8j/chr6_138229684-138229952.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXnzEs8j/chr6_138229684-138229952.bed.gz.tbi

Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXnzEs8j/chr6_138229684-138229952.bed.gz.tbi
[2026-06-03T20:58:26.300384Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-03T20:58:26.323201Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-03T20:58:26.323227Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-03T20:58:26.323232Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-03T20:58:26.323236Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXnzEs8j'
[2026-06-03T20:58:26.323240Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-03T20:58:26.323244Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-03T20:58:26.323248Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-03T20:58:26.323252Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-03T20:58:26.323255Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-03T20:58:26.323259Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-03T20:58:26.323263Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-03T20:58:26.323266Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-03T20:58:26.323270Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-03T20:58:26.323821Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-03T20:58:26.323927Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-03T20:58:26.329592Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-03T20:58:26.330590Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-03T20:58:26.330686Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-03T20:58:26.331080Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-03T20:58:26.331351Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.331875Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.331964Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.332038Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.332153Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.332221Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.332338Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.332403Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.332881Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.333015Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.333157Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.333282Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.333369Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.333916Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.334309Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.336367Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.336545Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.336726Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-03T20:58:26.336992Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.337067Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.337674Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.337860Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.337978Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.338044Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.338154Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.338217Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.338333Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.338397Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.338513Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.338581Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.338691Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.338767Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.338941Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.339367Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.339507Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.339574Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.339686Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.339750Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.339858Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.339924Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.340029Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.340093Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.340200Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.340264Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.340377Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.340560Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.341015Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.341083Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.341255Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.341324Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.341432Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.341496Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.341609Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.341669Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.341799Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.341865Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.341985Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.342218Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.342751Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0012' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.342817Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0012' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.342931Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0013' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.342991Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0013' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.343101Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.343164Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.343272Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.343338Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.343443Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.343504Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.343611Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.343680Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.343908Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.344416Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.344527Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.344589Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.345843Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.346016Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.346681Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.346751Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.346864Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.346929Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.347039Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.347101Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.347213Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.347276Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.347382Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.347448Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.347573Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0012' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.348057Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0012' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.348829Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.349461Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.349622Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.349710Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.349830Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.349896Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.350012Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.350077Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.350189Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.350251Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.350358Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.350421Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.350608Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.351394Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.351924Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.351988Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.352096Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.352165Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.352269Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.352331Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.352440Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.352503Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.354929Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.355720Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.356153Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_398_chr6_GL000251v2_alt_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.356970Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_398_chr6_GL000251v2_alt_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.371204Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_444_chr6_GL000254v2_alt_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.371958Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_444_chr6_GL000254v2_alt_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.372111Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.372192Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.372562Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.373467Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.373728Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.373873Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.374348Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.374588Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.375235Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.375748Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.376308Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.376525Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T20:58:26.377100Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-03T20:58:26.377556Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.378390Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.379840Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.381683Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-06-03T20:58:26.382446Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.384655Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0003] Task initiated on local node
[2026-06-03T20:58:26.389647Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0010] Task initiated on local node
[2026-06-03T20:58:26.392169Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0014] Task initiated on local node
[2026-06-03T20:58:26.395960Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0013] Task initiated on local node
[2026-06-03T20:58:26.396700Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0005] Task initiated on local node
[2026-06-03T20:58:26.399895Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0007] Task initiated on local node
[2026-06-03T20:58:26.401047Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0009] Task initiated on local node
[2026-06-03T20:58:27.116461Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.117559Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.120420Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0009] Task initiated on local node
[2026-06-03T20:58:27.181737Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.181834Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.182934Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.183368Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.186323Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-06-03T20:58:27.187528Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0006] Task initiated on local node
[2026-06-03T20:58:27.247678Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.247781Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.248845Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.249099Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.252277Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0004] Task initiated on local node
[2026-06-03T20:58:27.253056Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0011] Task initiated on local node
[2026-06-03T20:58:27.313693Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.314838Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.317449Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0011] Task initiated on local node
[2026-06-03T20:58:27.346760Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.346835Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.347960Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.348279Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0012' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.351306Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0002] Task initiated on local node
[2026-06-03T20:58:27.352038Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0012] Task initiated on local node
[2026-06-03T20:58:27.513124Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.514265Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_444_chr6_GL000254v2_alt_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.517361Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_444_chr6_GL000254v2_alt_0000] Task initiated on local node
[2026-06-03T20:58:27.628511Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_444_chr6_GL000254v2_alt_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.629647Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_444_chr6_GL000254v2_alt_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.632766Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_444_chr6_GL000254v2_alt_0000] Task initiated on local node
[2026-06-03T20:58:27.694234Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_444_chr6_GL000254v2_alt_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.695360Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.698391Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0006] Task initiated on local node
[2026-06-03T20:58:27.727648Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.728755Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.731772Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0003] Task initiated on local node
[2026-06-03T20:58:27.760937Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.762035Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.764879Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0001] Task initiated on local node
[2026-06-03T20:58:28.026876Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.028085Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.031172Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0004] Task initiated on local node
[2026-06-03T20:58:28.060378Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.061450Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.064400Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-06-03T20:58:28.125901Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.127020Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.129769Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0013] Task initiated on local node
[2026-06-03T20:58:28.159273Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.160326Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.163310Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0011] Task initiated on local node
[2026-06-03T20:58:28.324860Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.326044Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.329090Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-06-03T20:58:28.390274Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.390346Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.391322Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.391598Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.394757Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-06-03T20:58:28.395827Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0009] Task initiated on local node
[2026-06-03T20:58:28.423694Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.424669Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.427378Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0014] Task initiated on local node
[2026-06-03T20:58:28.456733Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.456813Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.457771Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.458099Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.461004Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0007] Task initiated on local node
[2026-06-03T20:58:28.461921Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-06-03T20:58:28.490406Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.491361Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.494251Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0000] Task initiated on local node
[2026-06-03T20:58:28.656000Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.657055Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0013' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.660031Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0013] Task initiated on local node
[2026-06-03T20:58:28.871859Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.871952Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.871976Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.872960Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.873416Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.873762Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.876092Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0006] Task initiated on local node
[2026-06-03T20:58:28.878474Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-06-03T20:58:28.879685Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0001] Task initiated on local node
[2026-06-03T20:58:28.908494Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.908568Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.908593Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.908612Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.909470Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.909868Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.910450Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.910736Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.914177Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0002] Task initiated on local node
[2026-06-03T20:58:28.915429Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-06-03T20:58:28.916810Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0010] Task initiated on local node
[2026-06-03T20:58:28.918034Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-06-03T20:58:28.943557Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.943624Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.944721Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.945041Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.945541Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.948143Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0005] Task initiated on local node
[2026-06-03T20:58:28.949877Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.950123Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-06-03T20:58:28.952463Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0002] Task initiated on local node
[2026-06-03T20:58:28.981878Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.982732Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.985161Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0003] Task initiated on local node
[2026-06-03T20:58:29.014563Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.015428Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.018252Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-06-03T20:58:29.047453Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.048438Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.051505Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0003] Task initiated on local node
[2026-06-03T20:58:29.112830Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.113640Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.116462Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-06-03T20:58:29.178004Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.178966Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.181796Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0000] Task initiated on local node
[2026-06-03T20:58:29.343518Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.344495Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.347159Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-06-03T20:58:29.408639Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.409594Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.412311Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0001] Task initiated on local node
[2026-06-03T20:58:29.523992Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.524943Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.527619Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0000] Task initiated on local node
[2026-06-03T20:58:29.532880Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.533781Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.536655Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0011] Task initiated on local node
[2026-06-03T20:58:29.541436Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.542229Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0012' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.544799Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0012] Task initiated on local node
[2026-06-03T20:58:29.557964Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.558749Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.561405Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-06-03T20:58:29.566502Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.567262Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.570297Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-06-03T20:58:29.574975Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.575730Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.578266Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0008] Task initiated on local node
[2026-06-03T20:58:30.140906Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.141882Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.144819Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0008] Task initiated on local node
[2026-06-03T20:58:30.206204Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.207149Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.210095Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0007] Task initiated on local node
[2026-06-03T20:58:30.271409Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.272334Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.275327Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0008] Task initiated on local node
[2026-06-03T20:58:30.288358Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.289181Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.292287Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0007] Task initiated on local node
[2026-06-03T20:58:30.321390Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.322302Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.325259Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0008] Task initiated on local node
[2026-06-03T20:58:30.354222Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.355121Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.358113Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0003] Task initiated on local node
[2026-06-03T20:58:30.387146Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.388092Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.391219Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0002] Task initiated on local node
[2026-06-03T20:58:30.420131Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.420998Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.423794Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0002] Task initiated on local node
[2026-06-03T20:58:30.452947Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.453047Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.453848Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.454127Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.457181Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0002] Task initiated on local node
[2026-06-03T20:58:30.458504Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-06-03T20:58:30.486513Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.487359Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.490344Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0006] Task initiated on local node
[2026-06-03T20:58:30.519318Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.520130Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_398_chr6_GL000251v2_alt_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.523144Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_398_chr6_GL000251v2_alt_0000] Task initiated on local node
[2026-06-03T20:58:30.584163Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.584232Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.585001Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.585414Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.588466Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0001] Task initiated on local node
[2026-06-03T20:58:30.589289Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0000] Task initiated on local node
[2026-06-03T20:58:30.617909Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.617982Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_398_chr6_GL000251v2_alt_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.618723Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_398_chr6_GL000251v2_alt_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.619084Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.621983Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_398_chr6_GL000251v2_alt_0000] Task initiated on local node
[2026-06-03T20:58:30.622774Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-06-03T20:58:30.652301Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.652366Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.653142Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.653649Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.656831Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_005_chr6_0000] Task initiated on local node
[2026-06-03T20:58:30.657523Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0005] Task initiated on local node
[2026-06-03T20:58:30.658440Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.658488Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_398_chr6_GL000251v2_alt_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.659092Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.659285Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.661864Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0000] Task initiated on local node
[2026-06-03T20:58:30.662694Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0004] Task initiated on local node
[2026-06-03T20:58:30.691339Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.692100Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.695046Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0012] Task initiated on local node
[2026-06-03T20:58:30.700006Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.700675Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.703647Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0000] Task initiated on local node
[2026-06-03T20:58:30.716711Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.717393Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.720225Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0007] Task initiated on local node
[2026-06-03T20:58:30.749647Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.750473Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.752964Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0005] Task initiated on local node
[2026-06-03T20:58:30.782399Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.783402Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.786212Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0011] Task initiated on local node
[2026-06-03T20:58:30.791244Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.792146Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.794712Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-06-03T20:58:30.824224Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.825134Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.828150Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0006] Task initiated on local node
[2026-06-03T20:58:31.340075Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.340785Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.343913Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-06-03T20:58:31.372884Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.373597Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0012' from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.376701Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0012] Task initiated on local node
[2026-06-03T20:58:31.638455Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.639213Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.642334Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0004] Task initiated on local node
[2026-06-03T20:58:31.671472Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.672183Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.675274Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0001] Task initiated on local node
[2026-06-03T20:58:31.688086Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.688755Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.691394Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0004] Task initiated on local node
[2026-06-03T20:58:31.704548Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.705175Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.707886Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0003] Task initiated on local node
[2026-06-03T20:58:31.737176Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.737340Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.738017Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.738504Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.739259Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.741637Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0001] Task initiated on local node
[2026-06-03T20:58:31.742752Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.744205Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.745873Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0010] Task initiated on local node
[2026-06-03T20:58:31.746694Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.746839Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0008] Task initiated on local node
[2026-06-03T20:58:31.748999Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0012] Task initiated on local node
[2026-06-03T20:58:31.778622Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.778678Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.778702Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.778719Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.779282Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.779669Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.779870Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.780280Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.783060Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0007] Task initiated on local node
[2026-06-03T20:58:31.784710Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0004] Task initiated on local node
[2026-06-03T20:58:31.786006Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-06-03T20:58:31.787219Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0010] Task initiated on local node
[2026-06-03T20:58:31.797245Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.797838Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.800928Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0011] Task initiated on local node
[2026-06-03T20:58:31.813981Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.814039Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.814061Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.814569Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.814850Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.815101Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.817716Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-06-03T20:58:31.819967Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0005] Task initiated on local node
[2026-06-03T20:58:31.821030Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-06-03T20:58:31.832111Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.832659Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.835066Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0008] Task initiated on local node
[2026-06-03T20:58:31.848352Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.848422Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.848964Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.849466Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0013' from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.852105Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0009] Task initiated on local node
[2026-06-03T20:58:31.853365Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0013] Task initiated on local node
[2026-06-03T20:58:31.865479Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.866029Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.868465Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0010] Task initiated on local node
[2026-06-03T20:58:31.869501Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.869998Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.872357Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0006] Task initiated on local node
[2026-06-03T20:58:31.885988Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.886046Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.886543Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.886890Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.890201Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0009] Task initiated on local node
[2026-06-03T20:58:31.895027Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.902865Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.942992Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-06-03T20:58:31.966883Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.966955Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.967457Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.969933Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0009] Task initiated on local node
[2026-06-03T20:58:31.999534Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:32.264567Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:32.265099Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:32.267844Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0005] Task initiated on local node
[2026-06-03T20:58:32.297102Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:32.812582Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:32.812657Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:32.813140Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:32.813534Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0012' from sub-workflow 'CallGenome'
[2026-06-03T20:58:32.816501Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0010] Task initiated on local node
[2026-06-03T20:58:32.817233Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0012] Task initiated on local node
[2026-06-03T20:58:32.845668Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:32.845723Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:33.210339Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:33.210875Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:33.213423Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-06-03T20:58:33.242787Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:33.243076Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:33.243206Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:33.243708Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-03T20:58:33.244068Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:33.248453Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-03T20:58:33.249968Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-03T20:58:33.251244Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-03T20:58:33.276891Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:33.276944Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:33.277135Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:33.277416Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:33.280364Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-03T20:58:33.281052Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:33.281379Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-03T20:58:33.312770Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:33.312820Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:33.312991Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T20:58:33.315401Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-03T20:58:33.344969Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:36.967560Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-03T20:58:45.211552Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-03T20:58:45.211552Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] 
[2026-06-03T20:58:45.211552Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-03T20:58:45.211623Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] 
[2026-06-03T20:58:45.211632Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-03T20:58:45.211639Z] [nf-4940b07f9a5449227b18a2c2f8895ccd-bb249-lb6vc] [569_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec