cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta -t 12 --interval chr1_69091-70008.bed.gz -i HCC1395_BL.recalibrated.bam --algo Haplotyper -d dbsnp_146.hg38.vcf.gz --emit_mode variant germline_control_1.haplotyper.chr1_69091-70008.bed.unfiltered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:16986463, elapsed 0.0s, est remaining 0.8s, peak mem 87MB, user 0.0s, sys 0.2s, output queue size 765
progress 10% @chr1:37752876, elapsed 0.1s, est remaining 0.7s, peak mem 96MB, user 0.1s, sys 0.3s, output queue size 3420
progress 15% @chr1:65405870, elapsed 0.1s, est remaining 0.7s, peak mem 109MB, user 0.1s, sys 0.5s, output queue size 6142
progress 20% @chr1:113814905, elapsed 0.2s, est remaining 0.6s, peak mem 121MB, user 0.1s, sys 0.6s, output queue size 8902
progress 25% @chr1:155250276, elapsed 0.2s, est remaining 0.6s, peak mem 132MB, user 0.2s, sys 0.8s, output queue size 11247
progress 30% @chr1:179102287, elapsed 0.2s, est remaining 0.5s, peak mem 141MB, user 0.2s, sys 0.9s, output queue size 13723
progress 35% @chr1:209789667, elapsed 0.3s, est remaining 0.5s, peak mem 151MB, user 0.3s, sys 1.0s, output queue size 16152
progress 40% @chr1:246986967, elapsed 0.3s, est remaining 0.5s, peak mem 160MB, user 0.3s, sys 1.2s, output queue size 18555
progress 45% @chr2:32543241, elapsed 0.3s, est remaining 0.4s, peak mem 171MB, user 0.3s, sys 1.3s, output queue size 20846
progress 50% @chr2:74492646, elapsed 0.4s, est remaining 0.4s, peak mem 184MB, user 0.4s, sys 1.5s, output queue size 23356
progress 55% @chr2:113499257, elapsed 0.4s, est remaining 0.3s, peak mem 193MB, user 0.4s, sys 1.6s, output queue size 25868
progress 60% @chr2:170954650, elapsed 0.5s, est remaining 0.3s, peak mem 202MB, user 0.4s, sys 1.8s, output queue size 28560
progress 65% @chr2:202757213, elapsed 0.5s, est remaining 0.3s, peak mem 216MB, user 0.4s, sys 1.9s, output queue size 30830
progress 70% @chr2:233772261, elapsed 0.5s, est remaining 0.2s, peak mem 223MB, user 0.5s, sys 2.1s, output queue size 33309
progress 75% @chr3:25623515, elapsed 0.6s, est remaining 0.2s, peak mem 235MB, user 0.5s, sys 2.2s, output queue size 35532
progress 80% @chr3:49804181, elapsed 0.6s, est remaining 0.2s, peak mem 243MB, user 0.5s, sys 2.3s, output queue size 38010
progress 85% @chr3:102452919, elapsed 0.6s, est remaining 0.1s, peak mem 256MB, user 0.6s, sys 2.5s, output queue size 40647
progress 90% @chr3:139582927, elapsed 0.7s, est remaining 0.1s, peak mem 264MB, user 0.6s, sys 2.6s, output queue size 43239
progress 95% @chr3:187741772, elapsed 0.7s, est remaining 0.0s, peak mem 279MB, user 0.7s, sys 2.7s, output queue size 45650
progress 100% @chr4:15567377, elapsed 0.8s, est remaining 0.0s, peak mem 288MB, user 0.7s, sys 2.9s, output queue size 465
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 12 max 192
algo: Haplotyper
license: sentieon:Haplotyper=12
input file size: 71692773
output file size: 22305
reads: 1001089
contig: 49651 intervals 9000373 bases
active: 100735 calls 0.000 user 0.000 sys 0.018 real
advance: 51084 calls 0.005 user 0.012 sys 0.022 real
calc: 100735 calls 0.009 user 0.003 sys 0.018 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.003 user 0.001 sys 1.394 real
fetch: 100735 calls 0.000 user 0.000 sys 0.019 real
fetch_ref: 100735 calls 0.155 user 0.064 sys 0.397 real
idle: 39 calls 0.009 user 0.014 sys 20.029 real
init: 1 calls 0.030 user 0.010 sys 0.041 real
region: 100735 calls 0.000 user 0.008 sys 0.020 real
tracker: 100735 calls 0.049 user 0.030 sys 0.088 real
overall: 302239744 mem 1.264 user 4.690 sys 2.510 real
ls: cannot access '*.g.vcf.gz': No such file or directory
ls: cannot access '*.g.vcf.gz.tbi': No such file or directory