Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/c7611cfc97f6ded658168c06a3dc2c/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/c7611cfc97f6ded658168c06a3dc2c/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/c7611cfc97f6ded658168c06a3dc2c/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7e/c6f1a4c7809881b67eefc20778f6dd/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/698ee2e2f0412f27d77a199998c21d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/698ee2e2f0412f27d77a199998c21d/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-m5yed0zk because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 21:02:49,618 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 21:02:50,447 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 21:02:50,623 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 21:02:51,548 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-03 21:02:51,619 - cnv_pipe.batch.run_model - INFO - Processing cluster 885 with 186 probes
2026-06-03 21:02:52,085 - cnv_pipe.batch.run_model.cluster885 - INFO - Child process started for cluster 885 with 186 probes
2026-06-03 21:03:45,214 - cnv_pipe.batch.run_model.cluster885 - INFO - Child process finished cluster 885. Wrote cluster_885_samples.csv and cluster_885_params.csv
2026-06-03 21:03:45,215 - cnv_pipe.batch.run_model - INFO - Cluster 885 finished in 53.60 seconds. Status: SUCCESS