cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i HCC1395_BL.md.bam --read_filter QualCalFilter,table=HCC1395_BL.table,indel=false --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz HCC1395_BL.table.post --algo ReadWriter HCC1395_BL.recalibrated.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:164000001, elapsed 0.1s, est remaining 2.1s, peak mem 357MB, user 0.3s, sys 2.6s, output queue size 7
progress 10% @chr2:76000001, elapsed 0.2s, est remaining 1.8s, peak mem 543MB, user 0.4s, sys 5.1s, output queue size 41
progress 15% @chr2:235000001, elapsed 0.3s, est remaining 1.6s, peak mem 648MB, user 0.7s, sys 7.5s, output queue size 12
progress 20% @chr3:154000001, elapsed 0.4s, est remaining 1.5s, peak mem 750MB, user 1.0s, sys 9.7s, output queue size 5
progress 25% @chr4:115000001, elapsed 0.5s, est remaining 1.4s, peak mem 825MB, user 1.2s, sys 12.2s, output queue size 14
progress 30% @chr5:86000001, elapsed 0.5s, est remaining 1.2s, peak mem 853MB, user 1.3s, sys 14.5s, output queue size 19
progress 35% @chr6:64000001, elapsed 0.6s, est remaining 1.1s, peak mem 963MB, user 1.5s, sys 16.9s, output queue size 1
progress 40% @chr7:54000001, elapsed 0.7s, est remaining 1.0s, peak mem 1035MB, user 1.7s, sys 19.3s, output queue size 1
progress 45% @chr8:57000001, elapsed 0.8s, est remaining 1.0s, peak mem 1171MB, user 1.9s, sys 21.6s, output queue size 65
progress 50% @chr9:74000001, elapsed 0.9s, est remaining 0.9s, peak mem 1266MB, user 2.2s, sys 24.0s, output queue size 10
progress 55% @chr10:96000001, elapsed 1.0s, est remaining 0.8s, peak mem 1299MB, user 2.3s, sys 26.5s, output queue size 5
progress 60% @chr11:122000001, elapsed 1.0s, est remaining 0.7s, peak mem 1363MB, user 2.5s, sys 28.9s, output queue size 14
progress 65% @chr13:16000001, elapsed 1.1s, est remaining 0.6s, peak mem 1405MB, user 2.7s, sys 31.3s, output queue size 10
progress 70% @chr14:61000001, elapsed 1.2s, est remaining 0.5s, peak mem 1467MB, user 2.9s, sys 33.8s, output queue size 14
progress 75% @chr16:14000001, elapsed 1.3s, est remaining 0.4s, peak mem 1549MB, user 3.1s, sys 36.2s, output queue size 6
progress 80% @chr17:82000001, elapsed 1.4s, est remaining 0.3s, peak mem 1582MB, user 3.4s, sys 38.6s, output queue size 2
progress 85% @chr20:22000001, elapsed 1.5s, est remaining 0.3s, peak mem 1665MB, user 3.6s, sys 41.1s, output queue size 2
progress 90% @chrX:45000001, elapsed 1.8s, est remaining 0.2s, peak mem 2791MB, user 5.7s, sys 42.5s, output queue size 114
progress 95% @chr21:30000001, elapsed 1.9s, est remaining 0.1s, peak mem 2821MB, user 8.3s, sys 43.1s, output queue size 276
progress 100% @chr21:41000001, elapsed 3.9s, est remaining 0.0s, peak mem 2844MB, user 19.4s, sys 44.3s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal ReadWriter
license: sentieon:QualCal=31 sentieon:ReadWriter=31
input file size: 51395361
output file size: 71692773
reads: 1001089
contig: 3367 intervals 3217346917 bases
ReadQualCal::clearEPSVecOne: 8 calls 0.000 user 0.000 sys 0.025 real
ReadQualCal::delayed_init: 1 calls 0.004 user 0.000 sys 0.024 real
ReadQualCal::init: 1 calls 0.010 user 0.000 sys 0.006 real
advance: 3219322 calls 1.700 user 5.403 sys 7.189 real
done: 1 calls 0.265 user 0.413 sys 0.680 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.005 user 0.000 sys 3.903 real
fetch: 3219322 calls 0.191 user 5.200 sys 5.514 real
fetch_reads: 3219322 calls 0.326 user 5.579 sys 5.585 real
fetch_ref: 13103 calls 0.071 user 0.007 sys 0.059 real
fetch_vcf: 13103 calls 1.086 user 0.080 sys 1.381 real
idle: 2238 calls 1.478 user 0.167 sys 101.950 real
init: 1 calls 0.006 user 0.000 sys 0.030 real
update: 13298 calls 5.899 user 1.138 sys 7.376 real
write: 3219322 calls 6.873 user 4.980 sys 12.474 real
overall: 2982371328 mem 24.041 user 45.304 sys 5.884 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 --algo QualCal --plot --before HCC1395_BL.table --after HCC1395_BL.table.post HCC1395_BL.csv
This software is licensed to bgold@natera.com by Sentieon Inc.
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
ReadQualCal::init: 2 calls 0.010 user 0.000 sys 0.025 real
done: 1 calls 0.048 user 0.002 sys 0.055 real
idle: 61 calls 0.002 user 0.000 sys 31.301 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 83587072 mem 0.068 user 0.034 sys 1.052 real