File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/7e372414ca6136858b7b8f76129240/.command.log
Size
69.9 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr10_74133927-74134264.bed)
Attempt

Content

View in new tab 
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr10_74133927-74134264.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/7e372414ca6136858b7b8f76129240/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr10_74133927-74134264.bed.gz.tbi
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/7e372414ca6136858b7b8f76129240/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/f2b19ea24476199183849c3fbd492f/Sig_18_Blood.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/f2b19ea24476199183849c3fbd492f/Sig_18_Blood.recalibrated.bam
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-03T20:58:24.635420Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-03T20:58:24.642851Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-03T20:58:24.642876Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-03T20:58:24.642881Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-03T20:58:24.642885Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXH5ua8H'
[2026-06-03T20:58:24.642889Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-03T20:58:24.642894Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-03T20:58:24.642898Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-03T20:58:24.642901Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-03T20:58:24.642905Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-03T20:58:24.642909Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-03T20:58:24.642913Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-03T20:58:24.642916Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-03T20:58:24.642920Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-03T20:58:24.643507Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-03T20:58:24.643629Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-03T20:58:24.649365Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-03T20:58:24.649974Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-03T20:58:24.650200Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-03T20:58:24.650625Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-03T20:58:24.650968Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.651776Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.651887Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.652153Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.652571Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.652725Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.652931Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.653076Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.653155Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.653876Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.653974Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.654110Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.654274Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.654585Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.654750Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.656806Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.657309Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-03T20:58:24.657405Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.657542Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.657607Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.657799Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.657868Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.657983Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.658052Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.658163Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.658224Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.658439Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.658742Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.658861Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.658929Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.659036Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.659129Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.659260Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.659329Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.659455Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.659523Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.659637Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.659702Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.659811Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.659945Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.660352Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.660618Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.660884Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.661279Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.661708Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.661771Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.661882Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.661944Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.662107Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.662171Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.662278Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.662342Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.662450Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.662548Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.662692Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.662841Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.663102Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.663532Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.663826Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.664299Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.664780Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.664841Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.664951Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.665013Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.665119Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.665192Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.665300Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.665360Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.665466Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.665529Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.665635Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.665699Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.665960Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.666429Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.684025Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.684598Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.684669Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.684918Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.685683Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.685803Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.685928Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.686059Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.686373Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.686663Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.687092Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.687920Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.688232Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.689053Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.689416Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.689727Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.690388Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-03T20:58:24.691310Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.692891Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.697748Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-03T20:58:24.698090Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0006] Task initiated on local node
[2026-06-03T20:58:24.701932Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-03T20:58:24.704937Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0004] Task initiated on local node
[2026-06-03T20:58:24.709011Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node
[2026-06-03T20:58:24.709784Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node
[2026-06-03T20:58:24.714434Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-03T20:58:24.715145Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0001] Task initiated on local node
[2026-06-03T20:58:24.778321Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.779061Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.782994Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-03T20:58:25.745874Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.746724Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.749686Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0009] Task initiated on local node
[2026-06-03T20:58:25.755121Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.755930Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.758709Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0010] Task initiated on local node
[2026-06-03T20:58:25.970681Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.971619Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.975065Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-03T20:58:26.136288Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.137469Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.140522Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node
[2026-06-03T20:58:26.153438Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.154615Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.157739Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0002] Task initiated on local node
[2026-06-03T20:58:26.170634Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.171789Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.174626Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node
[2026-06-03T20:58:26.203864Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.205067Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.207938Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node
[2026-06-03T20:58:26.269269Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.270441Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.273926Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-03T20:58:26.334806Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.335898Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.339142Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0011] Task initiated on local node
[2026-06-03T20:58:26.450203Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.451069Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.454336Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-03T20:58:26.515639Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.516473Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.519174Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-03T20:58:26.548405Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.549195Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.552104Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node
[2026-06-03T20:58:26.813974Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.814850Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.818301Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node
[2026-06-03T20:58:26.822771Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.823482Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.826425Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-03T20:58:27.188756Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.189592Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.192593Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0009] Task initiated on local node
[2026-06-03T20:58:27.205746Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.206480Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.209371Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0002] Task initiated on local node
[2026-06-03T20:58:27.238608Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.238689Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.239421Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.240009Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.242932Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-03T20:58:27.244038Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node
[2026-06-03T20:58:27.272670Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.273405Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.276101Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0006] Task initiated on local node
[2026-06-03T20:58:27.305715Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.306480Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.309394Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node
[2026-06-03T20:58:27.338616Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.339335Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.342082Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0000] Task initiated on local node
[2026-06-03T20:58:27.403455Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.404228Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.407325Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-03T20:58:27.468451Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.469171Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.472047Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-03T20:58:27.501363Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.501440Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.502099Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.502366Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.506055Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0005] Task initiated on local node
[2026-06-03T20:58:27.507068Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node
[2026-06-03T20:58:28.069236Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.070034Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.073324Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node
[2026-06-03T20:58:28.134427Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.135159Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.138153Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-03T20:58:28.199335Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.200096Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.202813Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node
[2026-06-03T20:58:28.232135Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.233166Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.236167Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node
[2026-06-03T20:58:28.347390Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.348247Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.351084Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-03T20:58:28.356059Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.356948Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.359356Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0001] Task initiated on local node
[2026-06-03T20:58:28.388892Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.388962Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.389763Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.390277Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.393148Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0011] Task initiated on local node
[2026-06-03T20:58:28.394045Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node
[2026-06-03T20:58:28.422625Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.423503Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.426422Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0003] Task initiated on local node
[2026-06-03T20:58:28.455471Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.456256Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.458636Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node
[2026-06-03T20:58:28.488112Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.488980Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.491616Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-03T20:58:28.553071Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.553908Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.556500Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-03T20:58:28.569682Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.570462Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.572737Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node
[2026-06-03T20:58:28.586305Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.587054Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.589512Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0010] Task initiated on local node
[2026-06-03T20:58:28.602911Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.603763Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.606177Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0008] Task initiated on local node
[2026-06-03T20:58:28.619580Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.620353Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.623073Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-03T20:58:28.684405Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.685208Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.687988Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_009_chr10_0000] Task initiated on local node
[2026-06-03T20:58:28.749483Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.750307Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.753189Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-03T20:58:28.814539Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.815443Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.818488Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-03T20:58:28.847633Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.848424Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.851074Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node
[2026-06-03T20:58:28.912569Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.913366Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.916136Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node
[2026-06-03T20:58:28.945404Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.946162Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.948896Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node
[2026-06-03T20:58:29.010280Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.011064Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.014093Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node
[2026-06-03T20:58:29.043185Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.043992Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.046812Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-03T20:58:29.075969Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.076656Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.079601Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node
[2026-06-03T20:58:29.084580Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.085292Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.087960Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0003] Task initiated on local node
[2026-06-03T20:58:29.117332Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.117398Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.117999Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.118312Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.121452Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-03T20:58:29.121854Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0007] Task initiated on local node
[2026-06-03T20:58:29.134435Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.135124Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.137870Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-03T20:58:29.150950Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.151646Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.154322Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node
[2026-06-03T20:58:29.167475Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.168110Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.170845Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-03T20:58:29.183842Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.184465Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.187083Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0004] Task initiated on local node
[2026-06-03T20:58:29.216375Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.224239Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.224873Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.228001Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-03T20:58:29.256862Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.371095Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.371195Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.371813Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.372138Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.374613Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0008] Task initiated on local node
[2026-06-03T20:58:29.375632Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node
[2026-06-03T20:58:29.404196Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.404816Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.468823Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.469325Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.471807Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0000] Task initiated on local node
[2026-06-03T20:58:29.501156Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.517031Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.517409Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.519818Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0005] Task initiated on local node
[2026-06-03T20:58:29.549419Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.763666Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.764044Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.766431Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node
[2026-06-03T20:58:29.797041Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.911139Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.911535Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.914091Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0007] Task initiated on local node
[2026-06-03T20:58:29.943571Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.943832Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.943957Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.944246Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.944659Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.948457Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-03T20:58:29.950142Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-03T20:58:29.951020Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-03T20:58:29.978229Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.978289Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.978312Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.978501Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.978776Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.980986Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-03T20:58:29.981911Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-03T20:58:30.011705Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.011765Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.011936Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.014168Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-03T20:58:30.043874Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.358544Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-03T20:58:35.184061Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-03T20:58:35.184061Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] 
[2026-06-03T20:58:35.184061Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-03T20:58:35.184107Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] 
[2026-06-03T20:58:35.184118Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-03T20:58:35.184125Z] [nf-cb7e372414ca6136858b7b8f76129240-80ae5-7kgtw] [602_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec