[2026-06-03T20:58:20.018079Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-03T20:58:20.030028Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-03T20:58:20.030057Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-03T20:58:20.030062Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-03T20:58:20.030066Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXn3kftH'
[2026-06-03T20:58:20.030070Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-03T20:58:20.030075Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-03T20:58:20.030088Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-03T20:58:20.030092Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-03T20:58:20.030095Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-03T20:58:20.030099Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-03T20:58:20.030103Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-03T20:58:20.030109Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-03T20:58:20.030113Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-03T20:58:20.030685Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-03T20:58:20.030802Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-03T20:58:20.037118Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-03T20:58:20.037807Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-03T20:58:20.038001Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-03T20:58:20.038199Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-03T20:58:20.038627Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T20:58:20.039464Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:20.039553Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:20.039626Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:20.039995Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:20.040089Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.040397Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:20.041250Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:20.041395Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:20.042293Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:20.043022Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:20.043474Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-03T20:58:20.043710Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:20.043980Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:20.044105Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:20.044172Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:20.044286Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:20.044351Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:20.044465Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:20.044548Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:20.044734Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:20.044802Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:20.044914Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:20.044983Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:20.045178Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:20.045469Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:20.045589Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:20.045655Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:20.045762Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:20.045828Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:20.045937Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:20.046013Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:20.046127Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:20.046189Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:20.046294Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:20.046357Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:20.046560Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:20.046911Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:20.047022Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:20.047086Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:20.047195Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:20.047255Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:20.047365Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:20.047436Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:20.047546Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:20.047608Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:20.047722Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:20.047786Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:20.048002Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:20.048469Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:20.048729Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:20.049157Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:20.049272Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:20.049338Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:20.049450Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:20.049511Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:20.064594Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:20.064914Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:20.064985Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-03T20:58:20.065135Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:20.065214Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:20.065299Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:20.065365Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:20.065470Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-03T20:58:20.065536Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T20:58:20.065584Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-03T20:58:20.067847Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.068451Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.069788Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.070411Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.070587Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0004] Task initiated on local node
[2026-06-03T20:58:20.071032Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.071700Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.072187Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.074245Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.075263Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.077696Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0000] Task initiated on local node
[2026-06-03T20:58:20.083511Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0001] Task initiated on local node
[2026-06-03T20:58:20.091445Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0006] Task initiated on local node
[2026-06-03T20:58:20.091635Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-03T20:58:20.091775Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0003] Task initiated on local node
[2026-06-03T20:58:20.092284Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0003] Task initiated on local node
[2026-06-03T20:58:20.191852Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.191927Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.191949Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.192588Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.193205Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.195113Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.196066Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0006] Task initiated on local node
[2026-06-03T20:58:20.199109Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-03T20:58:20.200259Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0001] Task initiated on local node
[2026-06-03T20:58:20.228368Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.229049Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.232090Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0007] Task initiated on local node
[2026-06-03T20:58:20.945262Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.946013Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.949349Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0004] Task initiated on local node
[2026-06-03T20:58:21.010267Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.010935Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.013482Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0004] Task initiated on local node
[2026-06-03T20:58:21.043010Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.043090Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.043700Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.045684Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.046741Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0002] Task initiated on local node
[2026-06-03T20:58:21.049190Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0000] Task initiated on local node
[2026-06-03T20:58:21.110556Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.111180Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.113913Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-03T20:58:21.626618Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.627329Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.630521Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0006] Task initiated on local node
[2026-06-03T20:58:21.659315Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.659935Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.662609Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0001] Task initiated on local node
[2026-06-03T20:58:21.774092Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.774751Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.777778Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0007] Task initiated on local node
[2026-06-03T20:58:21.806721Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.807348Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.809738Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-03T20:58:21.921652Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.922294Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.925231Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0001] Task initiated on local node
[2026-06-03T20:58:21.954479Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.955068Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.957862Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-03T20:58:22.019245Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.019863Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.022397Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-03T20:58:22.051824Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.052422Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.055277Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0005] Task initiated on local node
[2026-06-03T20:58:22.166740Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.167360Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.170435Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0002] Task initiated on local node
[2026-06-03T20:58:22.199481Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.200069Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.202689Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0005] Task initiated on local node
[2026-06-03T20:58:22.364703Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.365340Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.367876Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0004] Task initiated on local node
[2026-06-03T20:58:22.397163Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.397718Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.400261Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0001] Task initiated on local node
[2026-06-03T20:58:22.429581Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.430123Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.433131Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0005] Task initiated on local node
[2026-06-03T20:58:22.494113Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.494680Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.497179Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-03T20:58:22.526638Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.527195Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.529716Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_015_chr16_0000] Task initiated on local node
[2026-06-03T20:58:22.591373Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.591923Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.594458Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0000] Task initiated on local node
[2026-06-03T20:58:22.655920Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.656479Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.659664Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0003] Task initiated on local node
[2026-06-03T20:58:22.686127Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0000] Task initiated on local node
[2026-06-03T20:58:22.688620Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.688687Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.689139Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.689457Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.692046Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0003] Task initiated on local node
[2026-06-03T20:58:22.693040Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0000] Task initiated on local node
[2026-06-03T20:58:22.721351Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.721434Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.721890Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.722192Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.724869Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0000] Task initiated on local node
[2026-06-03T20:58:22.725895Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-03T20:58:22.754057Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.754566Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.757152Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0003] Task initiated on local node
[2026-06-03T20:58:22.786400Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.786470Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.786881Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.787270Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.790369Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0006] Task initiated on local node
[2026-06-03T20:58:22.791475Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0002] Task initiated on local node
[2026-06-03T20:58:22.851638Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.852118Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.854920Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0006] Task initiated on local node
[2026-06-03T20:58:23.117271Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.117378Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.117855Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.118128Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.121151Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0001] Task initiated on local node
[2026-06-03T20:58:23.122113Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0004] Task initiated on local node
[2026-06-03T20:58:23.150787Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.151281Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.154325Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0005] Task initiated on local node
[2026-06-03T20:58:23.183338Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.183807Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.186568Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-03T20:58:23.215844Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.216295Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.219056Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0002] Task initiated on local node
[2026-06-03T20:58:23.430810Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.431337Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.434276Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0003] Task initiated on local node
[2026-06-03T20:58:23.495452Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.495543Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.495959Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.498606Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0005] Task initiated on local node
[2026-06-03T20:58:23.528105Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.792818Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.793250Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.795876Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0002] Task initiated on local node
[2026-06-03T20:58:23.825447Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.939671Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.940083Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.942616Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0005] Task initiated on local node
[2026-06-03T20:58:23.971839Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.186208Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.186616Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.189276Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-03T20:58:24.218463Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.250422Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.250752Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.253023Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0004] Task initiated on local node
[2026-06-03T20:58:24.282635Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.547246Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.547636Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.550250Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0002] Task initiated on local node
[2026-06-03T20:58:24.579803Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.579868Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.580194Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.582423Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0006] Task initiated on local node
[2026-06-03T20:58:24.612501Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.612738Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.612861Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.613372Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.613863Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.616881Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-03T20:58:24.618150Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-03T20:58:24.619123Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-03T20:58:24.646342Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.646406Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.646428Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.646608Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.648138Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.648727Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-03T20:58:24.650873Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-03T20:58:24.680408Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.680476Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.680670Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.682787Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-03T20:58:24.712601Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.678791Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-03T20:58:30.555182Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-03T20:58:30.555182Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner]
[2026-06-03T20:58:30.555182Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] workflow version: 2.9.10
[2026-06-03T20:58:30.555236Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner]
[2026-06-03T20:58:30.555243Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-03T20:58:30.555248Z] [nf-3d648216267c49cceaae5cdd058250b9-07628-qzw5f] [572_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec