[2026-06-03T20:58:19.764362Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-03T20:58:19.775729Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-03T20:58:19.775752Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-03T20:58:19.775757Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-03T20:58:19.775761Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXZzcDgp'
[2026-06-03T20:58:19.775766Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-03T20:58:19.775770Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-03T20:58:19.775774Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-03T20:58:19.775778Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-03T20:58:19.775781Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-03T20:58:19.775785Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-03T20:58:19.775788Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-03T20:58:19.775791Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-03T20:58:19.775795Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-03T20:58:19.776420Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-03T20:58:19.776530Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-03T20:58:19.782240Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-03T20:58:19.782971Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-03T20:58:19.783126Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-03T20:58:19.783382Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-03T20:58:19.783648Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.784125Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.784214Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.784285Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.784400Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.784466Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.784585Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.784652Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.784801Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.785071Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.785307Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.785488Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.785566Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.785702Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.785895Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.786351Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.787625Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.788658Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-03T20:58:19.788988Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.789151Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.789318Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.789469Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.789590Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.789661Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.789780Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.789845Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.789966Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.790031Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.790334Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.790593Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.790706Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.790773Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.790908Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.790972Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.791086Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.791151Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.791266Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.791330Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.791441Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.791503Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.791619Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.791754Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.792192Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.792263Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.792376Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.792443Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.792561Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.792627Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.792800Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.792870Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.793006Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.793080Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.793203Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.793370Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.793815Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.793884Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.794007Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.794077Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.794191Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.794259Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.794374Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.794439Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.794554Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.794622Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.794734Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.794821Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.795114Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.795534Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.796094Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.796164Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.796280Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.796351Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.796464Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.796533Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.797956Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.798520Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.798653Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.798724Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.798840Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.798908Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.799024Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.799087Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.799203Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.799273Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.799383Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.799459Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.799585Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.799726Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.799945Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.800539Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.800708Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.801091Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.801733Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.802382Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.802516Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.802579Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.802693Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.802760Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.817103Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.817747Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.817937Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.818006Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.818954Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.819039Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.819178Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.819290Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.819517Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.819680Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.819842Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.820268Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.820515Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.820936Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-03T20:58:19.821322Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.822429Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.823377Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.824548Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.825616Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.829013Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-06-03T20:58:19.832558Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-03T20:58:19.836025Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0001] Task initiated on local node
[2026-06-03T20:58:19.838543Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-06-03T20:58:19.841858Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0003] Task initiated on local node
[2026-06-03T20:58:19.842519Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0006] Task initiated on local node
[2026-06-03T20:58:19.843195Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0013] Task initiated on local node
[2026-06-03T20:58:19.889453Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-06-03T20:58:19.907144Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.907215Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.907239Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.908016Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.908381Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.908906Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.913228Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0014] Task initiated on local node
[2026-06-03T20:58:19.914223Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0003] Task initiated on local node
[2026-06-03T20:58:19.915319Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-03T20:58:20.625180Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.626242Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.629525Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0000] Task initiated on local node
[2026-06-03T20:58:20.740895Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.740998Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.741993Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.742479Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.743400Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.747865Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0011] Task initiated on local node
[2026-06-03T20:58:20.748409Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.748620Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0002] Task initiated on local node
[2026-06-03T20:58:20.751074Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0016] Task initiated on local node
[2026-06-03T20:58:20.764367Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.765275Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.767828Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-06-03T20:58:20.829340Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.830271Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.832839Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-06-03T20:58:20.894250Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.895153Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.898152Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-06-03T20:58:20.959240Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.960205Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.962982Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-06-03T20:58:21.024429Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.025429Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.028042Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-06-03T20:58:21.057405Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.058339Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.061157Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-03T20:58:21.122704Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.123661Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.126368Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0000] Task initiated on local node
[2026-06-03T20:58:21.156896Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.157805Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.160215Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-06-03T20:58:21.173584Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.174418Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.177042Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-03T20:58:21.190412Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.191234Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.193905Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-06-03T20:58:21.207139Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.207964Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.210416Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-06-03T20:58:21.239879Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.240750Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.243656Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0015] Task initiated on local node
[2026-06-03T20:58:21.244504Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.245228Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.247647Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-06-03T20:58:21.309255Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.310159Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.312870Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0014] Task initiated on local node
[2026-06-03T20:58:21.325972Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.326840Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.329680Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0012] Task initiated on local node
[2026-06-03T20:58:21.342787Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.343591Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.346106Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-03T20:58:21.407663Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.408575Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.411661Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0008] Task initiated on local node
[2026-06-03T20:58:21.673663Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.674585Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.677683Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-06-03T20:58:22.139804Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.140752Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.143880Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0004] Task initiated on local node
[2026-06-03T20:58:22.205693Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.205764Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.206643Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.207063Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.210177Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-06-03T20:58:22.211233Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-03T20:58:22.239059Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.239921Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.242566Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0011] Task initiated on local node
[2026-06-03T20:58:22.271987Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.272821Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.275499Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0003] Task initiated on local node
[2026-06-03T20:58:22.304776Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.304859Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.304883Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.305687Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.305943Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.306363Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.309404Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0012] Task initiated on local node
[2026-06-03T20:58:22.310760Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-06-03T20:58:22.311595Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-03T20:58:22.339287Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.339335Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.340065Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.340298Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.343415Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0000] Task initiated on local node
[2026-06-03T20:58:22.344267Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0002] Task initiated on local node
[2026-06-03T20:58:22.372633Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.373450Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.376080Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-03T20:58:22.405407Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.405486Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.406207Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.406455Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.409565Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-06-03T20:58:22.410689Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-03T20:58:22.471083Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.471883Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.474562Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-06-03T20:58:22.503988Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.504755Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.507609Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0002] Task initiated on local node
[2026-06-03T20:58:22.512511Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.513233Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.515601Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0015] Task initiated on local node
[2026-06-03T20:58:22.545400Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.546110Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.548840Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0006] Task initiated on local node
[2026-06-03T20:58:22.578078Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.578712Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.581247Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0016] Task initiated on local node
[2026-06-03T20:58:22.610608Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.611323Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.613955Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0003] Task initiated on local node
[2026-06-03T20:58:22.643327Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.644043Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.646609Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0007] Task initiated on local node
[2026-06-03T20:58:22.708085Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.708847Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.711510Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-06-03T20:58:22.740795Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.741592Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.744150Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-03T20:58:22.773592Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.774313Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.777206Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0003] Task initiated on local node
[2026-06-03T20:58:22.988726Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.988821Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.989578Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.990076Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.993337Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-03T20:58:22.994566Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-06-03T20:58:23.022479Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.023180Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.025807Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0005] Task initiated on local node
[2026-06-03T20:58:23.287556Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.288312Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.290966Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-06-03T20:58:23.352410Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.352484Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.353146Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.353497Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.356513Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-06-03T20:58:23.357565Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0013] Task initiated on local node
[2026-06-03T20:58:23.385717Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.385782Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.386378Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.386648Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.389206Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0000] Task initiated on local node
[2026-06-03T20:58:23.390088Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0001] Task initiated on local node
[2026-06-03T20:58:23.418697Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.419286Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.422364Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-06-03T20:58:23.483838Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.484535Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.488871Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-06-03T20:58:23.550188Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.550844Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.553583Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0001] Task initiated on local node
[2026-06-03T20:58:23.614965Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.615644Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.620885Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0004] Task initiated on local node
[2026-06-03T20:58:23.648130Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.648756Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.651660Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-06-03T20:58:23.713040Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.713691Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.717678Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0000] Task initiated on local node
[2026-06-03T20:58:23.929307Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.929994Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.932782Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0005] Task initiated on local node
[2026-06-03T20:58:23.962051Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.962695Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.965175Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0007] Task initiated on local node
[2026-06-03T20:58:23.994597Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.995204Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.998018Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-06-03T20:58:24.027104Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.027677Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.030649Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0001] Task initiated on local node
[2026-06-03T20:58:24.059741Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.059812Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.060356Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.061688Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.063384Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-06-03T20:58:24.064275Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0009] Task initiated on local node
[2026-06-03T20:58:24.094013Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.094850Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.097192Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-06-03T20:58:24.158810Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.158898Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.159638Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.160101Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.165679Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-06-03T20:58:24.166733Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0002] Task initiated on local node
[2026-06-03T20:58:24.226000Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.226093Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.226859Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.227246Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.230111Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-06-03T20:58:24.230992Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0010] Task initiated on local node
[2026-06-03T20:58:24.259280Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.260083Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.262530Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0001] Task initiated on local node
[2026-06-03T20:58:24.291935Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.292672Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.295003Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0002] Task initiated on local node
[2026-06-03T20:58:24.324545Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.325291Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.327774Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0008] Task initiated on local node
[2026-06-03T20:58:24.357197Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.357948Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.360551Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-03T20:58:24.389839Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.390530Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.393015Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-06-03T20:58:24.394107Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.394814Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.397068Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0004] Task initiated on local node
[2026-06-03T20:58:24.458757Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.459448Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.462133Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-06-03T20:58:24.491464Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.492171Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.495021Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0002] Task initiated on local node
[2026-06-03T20:58:24.524220Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.638547Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.639183Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.641931Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-06-03T20:58:24.671095Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.735264Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.735735Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.738446Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_002_chr3_0000] Task initiated on local node
[2026-06-03T20:58:24.767680Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.768120Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.770448Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0001] Task initiated on local node
[2026-06-03T20:58:24.784514Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.784950Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.787508Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0000] Task initiated on local node
[2026-06-03T20:58:24.800669Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.832583Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.197259Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.197689Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.200159Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0009] Task initiated on local node
[2026-06-03T20:58:25.229792Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.945623Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.946075Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.948480Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0010] Task initiated on local node
[2026-06-03T20:58:25.977894Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.392692Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.393123Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.395452Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0004] Task initiated on local node
[2026-06-03T20:58:26.425291Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.899349Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.899829Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.902894Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0003] Task initiated on local node
[2026-06-03T20:58:30.963934Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.964198Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.964315Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.964726Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.965197Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.969053Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-03T20:58:30.970177Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-03T20:58:30.971157Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-03T20:58:30.997758Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.997816Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.997835Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.998011Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.998375Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.000699Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-03T20:58:31.001275Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-03T20:58:31.030582Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.030644Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.030816Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.033099Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-03T20:58:31.062761Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:38.733210Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-03T20:58:52.894765Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-03T20:58:52.894765Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] 
[2026-06-03T20:58:52.894765Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-03T20:58:52.894833Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] 
[2026-06-03T20:58:52.894840Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-03T20:58:52.894846Z] [nf-70c1f1118a3b767190938a1c53378b92-fda77-rvjcg] [568_1] [WorkflowRunner] Elapsed time for full workflow: 33 sec