cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample Sig_18_Blood --normal_sample reference-NA12878 --max_event_count 5 -v negative_somatic_control_2.tnseq.vcf.gz --contamination negative_somatic_control_2.tnseq.contamination_data.tsv --tumor_segments negative_somatic_control_2.tnseq.segments --orientation_priors negative_somatic_control_2.tnseq.orientation_data.tsv negative_somatic_control_2.tnseq.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:199000001, elapsed 0.1s, est remaining 1.9s, peak mem 807MB, user 0.1s, sys 1.8s, output queue size 158
progress 10% @chr3:176000001, elapsed 0.2s, est remaining 1.8s, peak mem 807MB, user 0.2s, sys 10.5s, output queue size 320
progress 15% @chr1:97000001, elapsed 0.3s, est remaining 1.7s, peak mem 807MB, user 0.5s, sys 25.9s, output queue size 481
progress 20% @chr5:98000001, elapsed 0.4s, est remaining 1.5s, peak mem 807MB, user 0.8s, sys 40.7s, output queue size 643
progress 25% @chr5:175000001, elapsed 0.5s, est remaining 1.4s, peak mem 807MB, user 1.2s, sys 53.2s, output queue size 804
progress 30% @chr5:132000001, elapsed 0.5s, est remaining 1.2s, peak mem 810MB, user 1.4s, sys 62.6s, output queue size 965
progress 35% @chr8:36000001, elapsed 0.6s, est remaining 1.2s, peak mem 810MB, user 1.7s, sys 76.2s, output queue size 1127
progress 40% @chr7:123000001, elapsed 0.7s, est remaining 1.0s, peak mem 810MB, user 1.8s, sys 87.6s, output queue size 1287
progress 45% @chr7:156000001, elapsed 0.7s, est remaining 0.9s, peak mem 810MB, user 2.0s, sys 99.9s, output queue size 1450
progress 50% @chr11:70000001, elapsed 0.8s, est remaining 0.8s, peak mem 810MB, user 2.4s, sys 113.0s, output queue size 1612
progress 55% @chr1:221000001, elapsed 0.8s, est remaining 0.7s, peak mem 810MB, user 2.7s, sys 127.4s, output queue size 1773
progress 60% @chr11:5000001, elapsed 0.9s, est remaining 0.6s, peak mem 810MB, user 3.0s, sys 148.2s, output queue size 1929
progress 65% @chr12:96000001, elapsed 0.9s, est remaining 0.5s, peak mem 810MB, user 3.3s, sys 163.2s, output queue size 2090
progress 70% @chr18:42000001, elapsed 1.0s, est remaining 0.4s, peak mem 810MB, user 3.5s, sys 171.1s, output queue size 2252
progress 75% @chr18:33000001, elapsed 1.1s, est remaining 0.4s, peak mem 810MB, user 3.9s, sys 179.0s, output queue size 2415
progress 80% @chr15:49000001, elapsed 1.1s, est remaining 0.3s, peak mem 810MB, user 4.4s, sys 187.7s, output queue size 2577
progress 85% @chr15:24000001, elapsed 1.2s, est remaining 0.2s, peak mem 810MB, user 4.7s, sys 195.7s, output queue size 2748
progress 90% @chr21:24000001, elapsed 1.3s, est remaining 0.1s, peak mem 810MB, user 5.0s, sys 204.9s, output queue size 3098
progress 95% @chrY:25000001, elapsed 1.3s, est remaining 0.1s, peak mem 810MB, user 5.5s, sys 214.5s, output queue size 3405
progress 100% @HLA-DRB1*16:02:01:1, elapsed 1.5s, est remaining 0.0s, peak mem 810MB, user 5.8s, sys 239.8s, output queue size 3450
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 384 max 384
algo: TNfilter
license: sentieon:TNhaplotyper=384
input file size: 51111
output file size: 43431
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 513 calls 0.002 user 0.000 sys 0.010 real
"predict_filter": 171 calls 0.016 user 0.012 sys 0.034 real
advance: 3219322 calls 0.465 user 85.610 sys 90.189 real
done: 1 calls 0.002 user 0.000 sys 0.002 real
execute: 1 calls 0.000 user 0.006 sys 1.678 real
fetch_ref: 460 calls 0.000 user 0.025 sys 0.029 real
idle: 20633 calls 0.612 user 0.417 sys 721.893 real
init: 1 calls 0.416 user 0.122 sys 0.719 real
overall: 849481728 mem 7.708 user 245.498 sys 3.640 real