File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/7943787c809884ea01f0e397c8a8fd/.command.err
Size
68.3 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_2;chr10_74133927-74134264.bed)
Attempt

Content

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[2026-06-03T20:58:21.881967Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-03T20:58:21.882500Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-03T20:58:21.882510Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-03T20:58:21.882515Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-03T20:58:21.882519Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXz49UyZ'
[2026-06-03T20:58:21.882523Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-03T20:58:21.882529Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-03T20:58:21.882533Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-03T20:58:21.882536Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-03T20:58:21.882540Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-03T20:58:21.882556Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-03T20:58:21.882560Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-03T20:58:21.882563Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-03T20:58:21.882567Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-03T20:58:21.883066Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-03T20:58:21.883188Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-03T20:58:21.888889Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-03T20:58:21.889749Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-03T20:58:21.889879Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-03T20:58:21.890192Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-03T20:58:21.890476Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.891172Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.891267Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.891338Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.891455Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.891519Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.892001Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.892092Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.892281Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.892410Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.892826Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.893343Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.893477Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.895373Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.895738Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-03T20:58:21.895802Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.896133Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.896325Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.896443Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.896507Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.896704Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.896774Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.896887Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.896955Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.897067Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.897132Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.897254Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.897323Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.897673Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.897887Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.898242Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.898530Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.898667Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.898734Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.898842Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.898905Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.899017Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.899081Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.899193Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.899256Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.899367Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.899429Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.899551Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.899691Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.900110Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.900173Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.900284Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.900402Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.900514Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.900579Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.900691Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.900754Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.900867Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.900928Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.901038Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.901134Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.901491Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.901845Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.901974Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.902043Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.902159Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.902222Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.902337Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.902404Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.902511Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.902585Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.902696Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.902758Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.902899Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.903059Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.903674Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.903740Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.903851Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.903916Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.921274Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.921788Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.921914Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.922156Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.922963Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.923251Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.923759Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.923888Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.924552Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.924656Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.925065Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.925509Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.926401Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.926810Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.927535Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.927699Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.928014Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-03T20:58:21.930807Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.931457Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0002] Task initiated on local node
[2026-06-03T20:58:21.932273Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.936579Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-03T20:58:21.939456Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node
[2026-06-03T20:58:21.944047Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-03T20:58:21.945644Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0001] Task initiated on local node
[2026-06-03T20:58:21.947519Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node
[2026-06-03T20:58:21.948207Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-03T20:58:21.950694Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0004] Task initiated on local node
[2026-06-03T20:58:22.464751Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.465623Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.468770Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node
[2026-06-03T20:58:22.881016Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.881889Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.885219Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0007] Task initiated on local node
[2026-06-03T20:58:22.996540Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.997417Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.000294Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node
[2026-06-03T20:58:23.061418Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.062283Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.065108Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0004] Task initiated on local node
[2026-06-03T20:58:23.094462Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.095217Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.097854Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node
[2026-06-03T20:58:23.159512Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.160362Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.163428Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node
[2026-06-03T20:58:23.375248Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.375337Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.376128Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.376462Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.379452Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node
[2026-06-03T20:58:23.380533Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node
[2026-06-03T20:58:23.409077Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.409172Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.409929Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.410247Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.413593Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0009] Task initiated on local node
[2026-06-03T20:58:23.414024Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-03T20:58:23.525694Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.526562Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.529697Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-03T20:58:23.591022Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.591832Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.594601Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0002] Task initiated on local node
[2026-06-03T20:58:23.623781Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.624604Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.627394Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0011] Task initiated on local node
[2026-06-03T20:58:23.839351Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.840187Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.842980Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-03T20:58:23.904402Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.905176Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.908278Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node
[2026-06-03T20:58:23.969562Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.970433Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.973356Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-03T20:58:24.002628Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.003483Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.006121Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-03T20:58:24.067691Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.068465Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.071128Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-03T20:58:24.100393Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.101503Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.101816Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.103964Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.104534Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0007] Task initiated on local node
[2026-06-03T20:58:24.106585Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node
[2026-06-03T20:58:24.136100Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.136185Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.136867Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.137330Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.140774Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node
[2026-06-03T20:58:24.141184Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0000] Task initiated on local node
[2026-06-03T20:58:24.402594Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.403393Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.405933Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-03T20:58:24.435295Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.436001Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.438769Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node
[2026-06-03T20:58:24.468172Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.468900Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.471400Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node
[2026-06-03T20:58:24.500763Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.501447Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.504499Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-03T20:58:24.565754Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.566482Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.569490Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node
[2026-06-03T20:58:24.598506Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.599219Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.602433Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-03T20:58:24.663475Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.663536Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.664092Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.664348Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.667780Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node
[2026-06-03T20:58:24.668314Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-03T20:58:24.729148Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.729850Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.732507Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0010] Task initiated on local node
[2026-06-03T20:58:24.894291Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.895007Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.897852Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0009] Task initiated on local node
[2026-06-03T20:58:24.927466Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.928156Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.930641Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-03T20:58:24.943923Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.944553Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.947441Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-03T20:58:24.960365Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.960960Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.964083Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0005] Task initiated on local node
[2026-06-03T20:58:25.025174Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.025837Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.028670Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-03T20:58:25.089972Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.090626Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.093387Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node
[2026-06-03T20:58:25.255177Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.255840Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.258720Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0011] Task initiated on local node
[2026-06-03T20:58:25.287873Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.288509Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.291237Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0003] Task initiated on local node
[2026-06-03T20:58:25.853748Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.853836Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.854444Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.854884Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.857670Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node
[2026-06-03T20:58:25.858660Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-03T20:58:25.887238Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.887303Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.887802Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.888181Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.890734Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-03T20:58:25.891658Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0001] Task initiated on local node
[2026-06-03T20:58:25.920501Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.920571Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.921084Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.921510Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.924077Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node
[2026-06-03T20:58:25.925049Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node
[2026-06-03T20:58:25.953539Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.954105Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.956811Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node
[2026-06-03T20:58:26.068377Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.069014Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.071799Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0003] Task initiated on local node
[2026-06-03T20:58:26.084895Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.085414Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.088258Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-03T20:58:26.101161Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.101646Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.104266Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0008] Task initiated on local node
[2026-06-03T20:58:26.117588Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.118103Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.120695Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-03T20:58:26.182233Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.182304Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.182863Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.183129Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.186074Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0010] Task initiated on local node
[2026-06-03T20:58:26.187125Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0006] Task initiated on local node
[2026-06-03T20:58:26.215414Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.215939Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.218559Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-03T20:58:26.247870Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.248410Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.250992Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_009_chr10_0000] Task initiated on local node
[2026-06-03T20:58:26.280440Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.280978Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.283721Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node
[2026-06-03T20:58:26.296804Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.297293Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.300007Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-03T20:58:26.313274Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.313761Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.316959Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-03T20:58:26.345704Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.346234Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.348907Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node
[2026-06-03T20:58:26.353832Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.354290Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.357115Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-03T20:58:26.386157Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.386224Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.418157Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.418562Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.421219Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0000] Task initiated on local node
[2026-06-03T20:58:26.450623Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.564927Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.565411Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.568232Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node
[2026-06-03T20:58:26.597544Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.012689Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.013191Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.015657Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0008] Task initiated on local node
[2026-06-03T20:58:27.045145Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.309644Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.310094Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.312825Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0005] Task initiated on local node
[2026-06-03T20:58:27.317960Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.318332Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.320582Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node
[2026-06-03T20:58:27.350622Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.350682Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.116002Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.116417Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.118908Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0006] Task initiated on local node
[2026-06-03T20:58:28.148600Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.148849Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.148962Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.149318Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.149772Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.152376Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-03T20:58:28.153563Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-03T20:58:28.154599Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-03T20:58:28.182969Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.183026Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.183048Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.183226Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.184684Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.186155Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-03T20:58:28.186917Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-03T20:58:28.216758Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.216814Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.216978Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.219376Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-03T20:58:28.249235Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:32.472003Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-03T20:58:40.771031Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-03T20:58:40.771031Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] 
[2026-06-03T20:58:40.771031Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-03T20:58:40.771087Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] 
[2026-06-03T20:58:40.771099Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-03T20:58:40.771105Z] [nf-487943787c809884ea01f0e397c8a8fd-ff0d7-wpnk5] [577_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec