[2026-06-03T20:58:21.654563Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-03T20:58:21.667307Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-03T20:58:21.667340Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-03T20:58:21.667347Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-03T20:58:21.667352Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXlQCY6m'
[2026-06-03T20:58:21.667356Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-03T20:58:21.667361Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-03T20:58:21.667364Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-03T20:58:21.667368Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-03T20:58:21.667371Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-03T20:58:21.667375Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-03T20:58:21.667378Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-03T20:58:21.667382Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-03T20:58:21.667386Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-03T20:58:21.668205Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-03T20:58:21.668333Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-03T20:58:21.673976Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-03T20:58:21.674625Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-03T20:58:21.674831Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-03T20:58:21.675089Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-03T20:58:21.675382Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.675865Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.675959Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.676037Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.676174Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.676252Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.676377Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.676479Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.676752Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.677047Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.677182Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.677397Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.677499Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.677998Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.678401Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.678708Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.680121Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.680693Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-03T20:58:21.680867Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.681052Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.681515Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.681584Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.681709Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.681775Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.681886Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.681947Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.682079Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.682145Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.682254Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.682319Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.682467Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.682570Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.682966Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.683276Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.683691Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.683758Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.683887Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.683949Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.684058Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.684122Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.684255Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.684322Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.684440Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.684504Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.684655Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.684802Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.685268Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.685415Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.685531Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.685599Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.685706Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.685769Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.685876Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.685937Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.686045Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.686124Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.686241Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.686379Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.686872Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.686970Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.687104Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.687166Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.687277Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.687340Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.687457Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.687538Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.687647Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.687710Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.688787Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.689168Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.689282Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.689347Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.689456Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.689516Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.690933Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.691446Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.691589Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.691667Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.691780Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.691845Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.691958Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.692019Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.692129Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.692213Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.692332Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.692401Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.692647Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.693269Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.693386Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.693455Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.693577Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.693643Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.693756Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.693819Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.693931Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.693994Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.694122Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.694182Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.712150Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.712733Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.713035Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.713148Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.714148Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.714268Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.714436Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.714816Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.715005Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.715254Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.715512Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.715732Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.716554Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.716924Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.717200Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-03T20:58:21.718209Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.720071Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.720686Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0001] Task initiated on local node
[2026-06-03T20:58:21.721307Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.722059Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.726065Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-03T20:58:21.728889Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-06-03T20:58:21.731421Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-06-03T20:58:21.734935Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0006] Task initiated on local node
[2026-06-03T20:58:21.736746Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0004] Task initiated on local node
[2026-06-03T20:58:21.737966Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-03T20:58:21.740188Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-03T20:58:21.803619Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.803723Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.804550Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.804821Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.808522Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-06-03T20:58:21.809411Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0003] Task initiated on local node
[2026-06-03T20:58:21.869398Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.870365Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.873237Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-03T20:58:21.934771Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.935765Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.938564Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-06-03T20:58:21.999985Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.001001Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.004252Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0000] Task initiated on local node
[2026-06-03T20:58:22.466864Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.467901Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.470816Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0008] Task initiated on local node
[2026-06-03T20:58:22.499914Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.500000Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.500947Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.501247Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.505076Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0009] Task initiated on local node
[2026-06-03T20:58:22.505658Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0004] Task initiated on local node
[2026-06-03T20:58:22.565957Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.566922Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.570122Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-06-03T20:58:22.631327Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.632298Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.634928Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-06-03T20:58:22.664323Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.665248Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.668096Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0012] Task initiated on local node
[2026-06-03T20:58:23.080341Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.081290Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.083984Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-03T20:58:23.113230Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.114124Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.117022Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-06-03T20:58:23.178267Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.179198Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.181897Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-06-03T20:58:23.211365Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.212319Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.215410Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0016] Task initiated on local node
[2026-06-03T20:58:23.426701Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.426795Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.427686Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.429573Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.430477Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-03T20:58:23.432671Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0008] Task initiated on local node
[2026-06-03T20:58:23.461801Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.461867Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.462717Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.463111Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.465977Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0011] Task initiated on local node
[2026-06-03T20:58:23.466890Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-03T20:58:23.495239Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.496059Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.498841Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0003] Task initiated on local node
[2026-06-03T20:58:23.610431Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.611389Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.614028Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0009] Task initiated on local node
[2026-06-03T20:58:23.643302Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.644189Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.647190Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-06-03T20:58:23.676610Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.677477Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.680078Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0012] Task initiated on local node
[2026-06-03T20:58:23.693290Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.694120Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.697183Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-06-03T20:58:23.702034Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.702826Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.705601Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0001] Task initiated on local node
[2026-06-03T20:58:23.718810Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.719594Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.722225Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0002] Task initiated on local node
[2026-06-03T20:58:23.735556Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.736358Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.739019Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0000] Task initiated on local node
[2026-06-03T20:58:23.752552Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.753363Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.756030Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-06-03T20:58:23.769204Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.769966Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.772815Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0002] Task initiated on local node
[2026-06-03T20:58:23.834021Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.834859Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.837502Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-06-03T20:58:23.866940Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.867821Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.870983Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-03T20:58:23.899901Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.900764Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.903496Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-06-03T20:58:23.932837Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.933651Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.936070Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-06-03T20:58:23.965561Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.966301Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.969048Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-06-03T20:58:24.030624Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.031474Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.034280Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0013] Task initiated on local node
[2026-06-03T20:58:24.647052Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.647854Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.650702Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0016] Task initiated on local node
[2026-06-03T20:58:24.712135Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.713084Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.716133Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-06-03T20:58:24.827331Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.828227Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.831005Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0004] Task initiated on local node
[2026-06-03T20:58:24.860212Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.860998Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.863859Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0000] Task initiated on local node
[2026-06-03T20:58:24.924997Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.925747Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.928749Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0014] Task initiated on local node
[2026-06-03T20:58:24.933582Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.934575Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.937381Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0000] Task initiated on local node
[2026-06-03T20:58:24.966796Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.967537Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.970686Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-06-03T20:58:25.082319Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.083231Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.086151Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-03T20:58:25.147402Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.148270Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.150998Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-06-03T20:58:25.212493Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.213320Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.216222Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0013] Task initiated on local node
[2026-06-03T20:58:25.277350Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.277456Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.278210Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.278508Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.281452Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0011] Task initiated on local node
[2026-06-03T20:58:25.282213Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.282623Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-06-03T20:58:25.283149Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.285275Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0003] Task initiated on local node
[2026-06-03T20:58:25.347087Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.347176Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.347202Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.347888Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.348229Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.348603Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.351022Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-06-03T20:58:25.353334Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0006] Task initiated on local node
[2026-06-03T20:58:25.354307Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0010] Task initiated on local node
[2026-06-03T20:58:25.380716Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.380808Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.381467Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.381771Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.384788Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0001] Task initiated on local node
[2026-06-03T20:58:25.386072Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0002] Task initiated on local node
[2026-06-03T20:58:25.446055Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.446803Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.449329Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-03T20:58:25.510972Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.511726Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.514410Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0007] Task initiated on local node
[2026-06-03T20:58:25.626075Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.626742Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.629751Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-06-03T20:58:25.658934Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.659655Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.662832Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0003] Task initiated on local node
[2026-06-03T20:58:25.824156Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.824255Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.824893Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.825214Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.828879Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0005] Task initiated on local node
[2026-06-03T20:58:25.829757Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0001] Task initiated on local node
[2026-06-03T20:58:26.291774Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.292637Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.295581Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0014] Task initiated on local node
[2026-06-03T20:58:26.324679Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.325366Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.327940Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-06-03T20:58:26.357522Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.358199Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.361159Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-06-03T20:58:26.422359Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.422483Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.423164Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.423463Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.426360Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-06-03T20:58:26.428231Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-03T20:58:26.455788Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.456387Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.459139Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-06-03T20:58:26.520496Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.521170Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.524045Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-06-03T20:58:26.553208Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.553871Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.556224Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0001] Task initiated on local node
[2026-06-03T20:58:26.585903Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.586509Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.589178Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0000] Task initiated on local node
[2026-06-03T20:58:26.751074Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.751722Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.754316Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-06-03T20:58:26.783955Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.784638Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.787119Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0004] Task initiated on local node
[2026-06-03T20:58:26.816622Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.817254Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.819832Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-06-03T20:58:26.849095Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.849705Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.852492Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0015] Task initiated on local node
[2026-06-03T20:58:27.063983Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.064701Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.067155Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0001] Task initiated on local node
[2026-06-03T20:58:27.096662Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.097276Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.099724Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0002] Task initiated on local node
[2026-06-03T20:58:27.100869Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.101334Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.103959Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-06-03T20:58:27.116997Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.117053Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.117553Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.117910Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.120455Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0002] Task initiated on local node
[2026-06-03T20:58:27.121337Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0010] Task initiated on local node
[2026-06-03T20:58:27.133831Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.134392Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.136582Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-06-03T20:58:27.150260Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.150340Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.150816Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.151117Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.153669Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-06-03T20:58:27.154451Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0005] Task initiated on local node
[2026-06-03T20:58:27.155257Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.155699Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.157969Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0007] Task initiated on local node
[2026-06-03T20:58:27.171566Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.172060Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.174474Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-06-03T20:58:27.187821Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.187889Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.187911Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.188383Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.188668Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.190950Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-03T20:58:27.191635Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0003] Task initiated on local node
[2026-06-03T20:58:27.204921Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.221080Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.221153Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.585799Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.586314Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.588614Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_002_chr3_0000] Task initiated on local node
[2026-06-03T20:58:27.650301Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.650789Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.653330Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0000] Task initiated on local node
[2026-06-03T20:58:27.714774Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.778813Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.779239Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.781347Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0002] Task initiated on local node
[2026-06-03T20:58:27.811009Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.025337Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.025781Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.028271Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0015] Task initiated on local node
[2026-06-03T20:58:28.057755Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:35.627691Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:35.628257Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:35.630996Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0003] Task initiated on local node
[2026-06-03T20:58:35.660543Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:35.660826Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:35.660952Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-03T20:58:35.661222Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:35.661555Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:35.665608Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-03T20:58:35.666929Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-03T20:58:35.667667Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-03T20:58:35.694212Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:35.694281Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:35.694304Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:35.694495Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:35.694752Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:35.697313Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-03T20:58:35.698028Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-03T20:58:35.726569Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:35.726627Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:35.726791Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T20:58:35.728994Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-03T20:58:35.758686Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:40.636152Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-03T20:58:54.786901Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-03T20:58:54.786901Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] 
[2026-06-03T20:58:54.786901Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-03T20:58:54.786975Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] 
[2026-06-03T20:58:54.786983Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-03T20:58:54.786989Z] [nf-c2915921feeb27155444fea3f784fd24-3e69f-cwst9] [586_1] [WorkflowRunner] Elapsed time for full workflow: 33 sec