File Info

Filename
output/Logs/Info.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/1f9f964e30ee50fe686124a6b88125/output/Logs/Info.log
Size
3.3 KB
Task
DAQ:BCL_TO_FASTQ:BCLCONVERT (REGRESSION;L004)
Attempt

Content

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2026-06-03T20:48:02Z thread 396 Sample sheet being processed by common lib? Yes
2026-06-03T20:48:02Z thread 396 SampleSheet Settings: 
2026-06-03T20:48:02Z thread 396   OverrideCycles = Y150;I8;I8;Y150
2026-06-03T20:48:02Z thread 396 
2026-06-03T20:48:02Z thread 396 shared-thread-linux-native-asio output is disabled
2026-06-03T20:48:02Z thread 396 bcl-convert Version 4.4.6
2026-06-03T20:48:02Z thread 396 Copyright (c) 2014-2025 Illumina, Inc.
2026-06-03T20:48:02Z thread 396 Command Line: --tiles s_4 --output-directory output --bcl-input-directory rundir --sample-sheet rundir/SampleSheet.csv 
2026-06-03T20:48:02Z thread 396 Conversion Begins.
2026-06-03T20:48:02Z thread 396 Input BCL Information:
2026-06-03T20:48:02Z thread 396     Read Structure: 2026-06-03T20:48:02Z thread 396 Y1502026-06-03T20:48:02Z thread 396 ;2026-06-03T20:48:02Z thread 396 I82026-06-03T20:48:02Z thread 396 ;2026-06-03T20:48:02Z thread 396 I82026-06-03T20:48:02Z thread 396 ;2026-06-03T20:48:02Z thread 396 Y1502026-06-03T20:48:02Z thread 396 
2026-06-03T20:48:02Z thread 396     RunInfo.xml file lists: 8 lanes, 8 tiles
2026-06-03T20:48:02Z thread 396     BCL file format: bcl.gz
2026-06-03T20:48:02Z thread 396     Positions file format: locs
2026-06-03T20:48:02Z thread 396     Filter file format: filter
2026-06-03T20:48:02Z thread 396 Conversion Information:
2026-06-03T20:48:02Z thread 396     Tile filtering: converting 1/8 tiles
2026-06-03T20:48:02Z thread 396     Lane 1 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-03T20:48:02Z thread 396     Lane 2 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-03T20:48:02Z thread 396     Lane 3 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-03T20:48:02Z thread 396     Lane 5 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-03T20:48:02Z thread 396     Lane 6 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-03T20:48:02Z thread 396     Lane 7 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-03T20:48:02Z thread 396     Lane 8 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-03T20:48:02Z thread 396     Sample Count: 4
2026-06-03T20:48:02Z thread 396     Expected number of sample FASTQ files to be created: 8
2026-06-03T20:48:02Z thread 396 # CPU hw threads available: 64
2026-06-03T20:48:02Z thread 396 Parallel Tiles: 4. Threads Per Tile: 16
2026-06-03T20:48:02Z thread 396 SW compressors: 64
2026-06-03T20:48:02Z thread 396 SW decompressors: 32
2026-06-03T20:48:02Z thread 396 SW FASTQ compression level: 1
2026-06-03T20:48:02Z thread 396 Lane 4 Post-run Information:
2026-06-03T20:48:02Z thread 396     Total clusters: 250000
2026-06-03T20:48:02Z thread 396     Total Genomic Reads: 500000
2026-06-03T20:48:02Z thread 396     Total Genomic Input Gigabases 0.08
2026-06-03T20:48:02Z thread 396     Minimum reads for a sample: 124566
2026-06-03T20:48:02Z thread 396     Maximum reads for a sample: 125346
2026-06-03T20:48:02Z thread 396     Average reads per sample: 125000.00
2026-06-03T20:48:02Z thread 396     Undetermined reads: 0
2026-06-03T20:48:02Z thread 396 Conversion Complete.