File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/315033b39774d1aa8f05de4ab0e08d/.command.err
Size
68.3 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_1;chr10_74133927-74134264.bed)
Attempt

Content

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[2026-06-03T20:58:24.923580Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-03T20:58:24.924328Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-03T20:58:24.924346Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-03T20:58:24.924353Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-03T20:58:24.924359Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXmfnTCy'
[2026-06-03T20:58:24.924364Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-03T20:58:24.924371Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-03T20:58:24.924377Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-03T20:58:24.924383Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] [RunParameters] memMb: 1015785
[2026-06-03T20:58:24.924388Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-03T20:58:24.924394Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-03T20:58:24.924399Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-03T20:58:24.924405Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-03T20:58:24.924411Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-03T20:58:24.925118Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-03T20:58:24.925167Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-03T20:58:24.932481Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-03T20:58:24.933070Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-03T20:58:24.933274Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-03T20:58:24.933575Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-03T20:58:24.933769Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.934630Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.934773Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.935123Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.935215Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.935454Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.935715Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.936156Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.936323Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.937523Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.937906Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.938207Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-03T20:58:24.938551Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.938776Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.938929Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.939018Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.939169Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.939255Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.939402Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.939484Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.939704Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.939862Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.940227Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.940316Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.940464Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.940547Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.940705Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.940793Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.940939Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.941080Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.941386Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.941763Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.941916Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.942000Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.942145Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.942232Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.942390Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.942477Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.942622Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.942710Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.943026Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.943567Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.944049Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.944146Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.944292Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.944381Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.944531Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.944681Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.944833Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.944921Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.945243Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.945717Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.945866Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.945949Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.946096Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.946198Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.946362Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.946450Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.946596Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.946684Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.946978Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.947556Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.947713Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.947800Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.947960Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.948057Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.948204Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.948286Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.948433Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.948526Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.948877Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.949498Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.949647Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.949733Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.968838Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.969102Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.969922Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.969994Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.970373Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.971066Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.971283Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.971418Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.971512Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.971834Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.972055Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.972312Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.972561Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.972971Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-03T20:58:24.973112Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.973807Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.974959Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.976216Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.979178Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node
[2026-06-03T20:58:24.979800Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.980123Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node
[2026-06-03T20:58:24.985001Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-03T20:58:24.986411Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-03T20:58:24.988658Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node
[2026-06-03T20:58:24.991024Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-03T20:58:24.993700Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node
[2026-06-03T20:58:24.994633Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-03T20:58:25.107045Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.107134Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.108018Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.108964Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.112975Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0002] Task initiated on local node
[2026-06-03T20:58:25.114087Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node
[2026-06-03T20:58:25.223965Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.225019Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.228284Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0007] Task initiated on local node
[2026-06-03T20:58:25.690246Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.691279Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.694454Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-03T20:58:25.805952Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.806970Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.810653Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0005] Task initiated on local node
[2026-06-03T20:58:25.971817Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.972809Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.975709Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node
[2026-06-03T20:58:26.688609Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.689538Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.692336Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0007] Task initiated on local node
[2026-06-03T20:58:26.754684Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.754776Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.755708Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.756358Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.759380Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0010] Task initiated on local node
[2026-06-03T20:58:26.760301Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-03T20:58:26.822184Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.823176Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.826189Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node
[2026-06-03T20:58:26.887405Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.888410Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.892012Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node
[2026-06-03T20:58:26.953217Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.954233Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.957230Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node
[2026-06-03T20:58:27.018540Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.019519Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.023365Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node
[2026-06-03T20:58:27.134771Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.135718Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.138567Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node
[2026-06-03T20:58:27.167885Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.168780Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.171791Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node
[2026-06-03T20:58:27.172920Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.173797Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.176811Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0011] Task initiated on local node
[2026-06-03T20:58:27.177821Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.178593Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.181297Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node
[2026-06-03T20:58:27.211884Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.211963Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.212815Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.213429Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.216421Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0002] Task initiated on local node
[2026-06-03T20:58:27.217668Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node
[2026-06-03T20:58:27.277916Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.278846Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.282285Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0009] Task initiated on local node
[2026-06-03T20:58:28.295258Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.296180Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.299315Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0004] Task initiated on local node
[2026-06-03T20:58:28.761524Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.762478Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.766376Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-03T20:58:28.827353Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.828237Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.831533Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0006] Task initiated on local node
[2026-06-03T20:58:28.892761Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.893618Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.896489Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-03T20:58:28.957630Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.957713Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.958493Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.959136Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.961880Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-03T20:58:28.963006Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node
[2026-06-03T20:58:29.023615Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.023697Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.024499Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.025020Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.028123Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node
[2026-06-03T20:58:29.029286Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-03T20:58:29.139700Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.140535Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.143400Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-03T20:58:29.204852Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.204953Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.205710Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.206161Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.209110Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node
[2026-06-03T20:58:29.209543Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0010] Task initiated on local node
[2026-06-03T20:58:29.270599Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.270711Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.271436Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.271946Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.275647Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node
[2026-06-03T20:58:29.276633Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node
[2026-06-03T20:58:29.338062Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.338892Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.341913Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-03T20:58:29.403125Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.403889Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.406925Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-03T20:58:29.469438Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.470245Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.473277Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-03T20:58:29.534748Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.534814Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.535513Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.536156Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.539387Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node
[2026-06-03T20:58:29.540423Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node
[2026-06-03T20:58:29.600368Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.601163Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.604543Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0005] Task initiated on local node
[2026-06-03T20:58:29.665699Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.666508Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.669820Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0000] Task initiated on local node
[2026-06-03T20:58:29.682801Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.683508Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.686973Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0004] Task initiated on local node
[2026-06-03T20:58:29.747996Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.748764Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.751845Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-03T20:58:29.812949Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.813059Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.813746Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.814127Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.817516Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-03T20:58:29.818848Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0009] Task initiated on local node
[2026-06-03T20:58:29.878422Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.878521Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.879195Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.879704Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.883349Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-03T20:58:29.884321Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0008] Task initiated on local node
[2026-06-03T20:58:30.946826Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.947479Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.950795Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0001] Task initiated on local node
[2026-06-03T20:58:31.312845Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.313591Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.316517Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_009_chr10_0000] Task initiated on local node
[2026-06-03T20:58:31.377682Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.378406Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.381142Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-03T20:58:31.443660Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.444379Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.447348Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0011] Task initiated on local node
[2026-06-03T20:58:31.476691Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.477353Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.480758Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-03T20:58:31.481304Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.481923Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.484969Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0003] Task initiated on local node
[2026-06-03T20:58:31.513934Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.514681Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.517726Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-03T20:58:31.580259Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.580909Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.584068Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0008] Task initiated on local node
[2026-06-03T20:58:31.645762Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.646452Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.649203Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node
[2026-06-03T20:58:31.710735Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.711379Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.714423Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-03T20:58:31.825733Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.826396Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.829215Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-03T20:58:31.890770Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.891397Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.894652Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node
[2026-06-03T20:58:31.956812Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:32.171427Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:32.172007Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:32.175115Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-03T20:58:32.236219Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:32.252206Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:32.252764Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:32.255818Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0006] Task initiated on local node
[2026-06-03T20:58:32.316914Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:32.381080Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:32.381628Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:32.384744Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node
[2026-06-03T20:58:32.445921Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:32.710554Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:32.711091Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:32.713769Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0003] Task initiated on local node
[2026-06-03T20:58:32.775341Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:33.190253Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:33.190773Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:33.193454Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0000] Task initiated on local node
[2026-06-03T20:58:33.254895Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:33.254969Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:33.255472Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:33.258344Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0001] Task initiated on local node
[2026-06-03T20:58:33.319663Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:33.985134Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:33.985915Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:33.988358Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-03T20:58:34.018267Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:34.018746Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:34.018863Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:34.019367Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:34.021152Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-03T20:58:34.022507Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-03T20:58:34.023888Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-03T20:58:34.024798Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-03T20:58:34.053231Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:34.053284Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:34.053311Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:34.053498Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:34.053817Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:34.056391Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-03T20:58:34.057053Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-03T20:58:34.086621Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:34.086828Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:34.087168Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T20:58:34.089632Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-03T20:58:34.119517Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:35.537452Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-03T20:58:43.814114Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-03T20:58:43.814114Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] 
[2026-06-03T20:58:43.814114Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-03T20:58:43.814159Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] 
[2026-06-03T20:58:43.814171Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-03T20:58:43.814180Z] [nf-0b315033b39774d1aa8f05de4ab0e08d-a6fce-9vgqv] [570_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec