Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/08509e531e1b03a6dd27b890787d98/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/84/8ce601019f94572f703235da1af69b/positive_somatic_control_1.snv_indel.whatshap.chr21.phased.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/08509e531e1b03a6dd27b890787d98/.command.run
==> STAGING COMPLETE (3 inputs)

Checking the headers and starting positions of 1 files
ls: positive_somatic_control_1.snv_indel.phased.vcf.gz.csi: No such file or directory