File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/5396379a13e4a54f0488843a6a8a5a/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-gj33181b because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 21:02:06,336 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 21:02:07,121 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 21:02:07,291 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 21:02:08,320 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-03 21:02:08,390 - cnv_pipe.batch.run_model - INFO - Processing cluster 668 with 192 probes
2026-06-03 21:02:08,760 - cnv_pipe.batch.run_model.cluster668 - INFO - Child process started for cluster 668 with 192 probes
2026-06-03 21:03:04,270 - cnv_pipe.batch.run_model.cluster668 - INFO - Child process finished cluster 668. Wrote cluster_668_samples.csv and cluster_668_params.csv
2026-06-03 21:03:04,271 - cnv_pipe.batch.run_model - INFO - Cluster 668 finished in 55.88 seconds. Status: SUCCESS