.command.log - Workdir - DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_1;chr4_22420786-22421189.bed)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/57/5e69a67a48dbc726f2e0fd06172371/.command.log
Size: 87.4 KB
Task: DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_1;chr4_22420786-22421189.bed)
Attempt
Content

  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr4_22420786-22421189.bed.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/57/5e69a67a48dbc726f2e0fd06172371/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/28/9b07206464e732a00b7bf74852ddd6/HCC1395_BL.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr4_22420786-22421189.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/28/9b07206464e732a00b7bf74852ddd6/HCC1395_BL.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/57/5e69a67a48dbc726f2e0fd06172371/.command.run
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-03T20:58:22.751870Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-03T20:58:22.766560Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-03T20:58:22.766596Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-03T20:58:22.766604Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-03T20:58:22.766609Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXnvvx6S'
[2026-06-03T20:58:22.766614Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-03T20:58:22.766621Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-03T20:58:22.766625Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-03T20:58:22.766629Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-03T20:58:22.766632Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-03T20:58:22.766636Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-03T20:58:22.766640Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-03T20:58:22.766644Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-03T20:58:22.766648Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-03T20:58:22.767250Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-03T20:58:22.767370Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-03T20:58:22.773140Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-03T20:58:22.773839Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-03T20:58:22.774097Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-03T20:58:22.774380Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-03T20:58:22.774737Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.775223Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.775319Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.775391Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.775514Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.775581Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.775701Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.775764Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.775992Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.776343Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.776472Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.776771Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.777055Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.777712Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.778057Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.779432Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.780147Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.780296Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-03T20:58:22.780755Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.780858Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.781091Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.781163Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.781281Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.781350Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.781464Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.781526Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.781809Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.782068Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.782182Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.782249Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.782362Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.782468Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.782602Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.782668Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.782827Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.782899Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.783014Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.783089Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.783390Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.783730Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.783845Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.783908Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.784019Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.784085Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.784190Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.784255Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.784369Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.784495Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.784613Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.784679Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.785006Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.785363Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.785477Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.785541Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.785652Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.785713Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.785823Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.785890Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.786001Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.786063Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.786176Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.786239Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.786349Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.786451Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.786733Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.787224Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.787342Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.787403Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.787522Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.787587Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.787711Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.787775Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.787882Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.787945Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.789503Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.790075Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.790206Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.790277Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.790394Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.790461Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.790573Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.790634Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.790746Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.790807Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.790916Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.790984Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.791205Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.791850Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.791968Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.792032Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.792145Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.792211Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.792323Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.792389Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.792535Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.792606Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.810444Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.810843Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.810980Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.811216Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.812263Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.812542Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.812658Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.813098Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.813196Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.813459Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.814406Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.814587Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.815030Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.816293Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.817287Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.817994Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.818399Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.819100Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.819777Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-03T20:58:22.822046Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-06-03T20:58:22.828538Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0015] Task initiated on local node
[2026-06-03T20:58:22.829862Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0002] Task initiated on local node
[2026-06-03T20:58:22.833326Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0013] Task initiated on local node
[2026-06-03T20:58:22.835293Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-06-03T20:58:22.837255Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0007] Task initiated on local node
[2026-06-03T20:58:22.838719Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0005] Task initiated on local node
[2026-06-03T20:58:22.839722Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0012] Task initiated on local node
[2026-06-03T20:58:23.404965Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.406002Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.409090Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0003] Task initiated on local node
[2026-06-03T20:58:23.770970Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.771061Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.772085Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.772488Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.775832Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-06-03T20:58:23.776820Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0012] Task initiated on local node
[2026-06-03T20:58:24.037549Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.038608Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.041519Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0008] Task initiated on local node
[2026-06-03T20:58:24.152984Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.154049Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.156940Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0007] Task initiated on local node
[2026-06-03T20:58:24.268471Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.268576Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.269599Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.269923Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.273123Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0015] Task initiated on local node
[2026-06-03T20:58:24.274099Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-06-03T20:58:24.287490Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.288420Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.290834Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0012] Task initiated on local node
[2026-06-03T20:58:24.304147Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.305017Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.308009Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0011] Task initiated on local node
[2026-06-03T20:58:24.321238Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.322127Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.324440Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0005] Task initiated on local node
[2026-06-03T20:58:24.354051Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.354963Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.357436Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0014] Task initiated on local node
[2026-06-03T20:58:24.419357Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.419439Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.420394Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.420706Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.423702Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-06-03T20:58:24.424608Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0001] Task initiated on local node
[2026-06-03T20:58:24.453578Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.454534Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.457155Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0007] Task initiated on local node
[2026-06-03T20:58:24.471587Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.472513Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.475280Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0002] Task initiated on local node
[2026-06-03T20:58:24.488329Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.489165Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.491819Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0000] Task initiated on local node
[2026-06-03T20:58:24.504906Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.505733Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.508259Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0005] Task initiated on local node
[2026-06-03T20:58:24.620180Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.620289Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.621226Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.621719Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.625555Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-06-03T20:58:24.626060Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0014] Task initiated on local node
[2026-06-03T20:58:24.654236Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.655132Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.657659Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0009] Task initiated on local node
[2026-06-03T20:58:24.719283Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.720237Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.722820Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0008] Task initiated on local node
[2026-06-03T20:58:24.752106Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.753052Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.755744Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0004] Task initiated on local node
[2026-06-03T20:58:25.168061Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.169069Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.171927Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0013] Task initiated on local node
[2026-06-03T20:58:25.201164Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.202312Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.203095Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.205391Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.205784Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0010] Task initiated on local node
[2026-06-03T20:58:25.208111Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-06-03T20:58:25.269571Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.270473Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.273307Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_003_chr4_0000] Task initiated on local node
[2026-06-03T20:58:25.334979Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.335901Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.338605Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0003] Task initiated on local node
[2026-06-03T20:58:25.367826Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.368654Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.371316Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-06-03T20:58:25.400691Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.400774Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.401611Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.402044Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.405014Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0005] Task initiated on local node
[2026-06-03T20:58:25.405651Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-06-03T20:58:25.434233Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.434311Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.435077Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.436867Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.437420Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0000] Task initiated on local node
[2026-06-03T20:58:25.439488Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0007] Task initiated on local node
[2026-06-03T20:58:25.469022Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.469096Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.469125Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.469893Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.470193Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.470571Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.472839Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0012] Task initiated on local node
[2026-06-03T20:58:25.475219Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-06-03T20:58:25.476504Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0002] Task initiated on local node
[2026-06-03T20:58:25.504365Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.505146Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.508107Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-06-03T20:58:25.719689Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.720504Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.723250Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0011] Task initiated on local node
[2026-06-03T20:58:25.752801Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.753654Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.756499Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0014] Task initiated on local node
[2026-06-03T20:58:25.785739Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.786573Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.789215Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-06-03T20:58:25.950891Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.951005Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.951801Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.952139Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.955213Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0010] Task initiated on local node
[2026-06-03T20:58:25.956428Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-06-03T20:58:25.984221Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.985046Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.987541Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0009] Task initiated on local node
[2026-06-03T20:58:26.017055Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.017860Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.020484Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-06-03T20:58:26.049785Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.050563Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.053319Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-06-03T20:58:26.058247Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.058321Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.058976Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.059221Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.062287Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0011] Task initiated on local node
[2026-06-03T20:58:26.063467Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-06-03T20:58:26.324621Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.325430Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.328168Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0002] Task initiated on local node
[2026-06-03T20:58:26.389505Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.390273Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.392846Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-06-03T20:58:26.454251Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.454971Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.457525Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0004] Task initiated on local node
[2026-06-03T20:58:26.486955Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.487664Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.490208Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0001] Task initiated on local node
[2026-06-03T20:58:26.551681Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.552475Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.555651Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0004] Task initiated on local node
[2026-06-03T20:58:26.717621Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.718392Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.721349Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-06-03T20:58:26.782771Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.782857Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.783533Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.783857Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.786877Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0009] Task initiated on local node
[2026-06-03T20:58:26.787911Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-06-03T20:58:26.816260Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.816996Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.819906Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0006] Task initiated on local node
[2026-06-03T20:58:26.824565Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.825155Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.827957Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0000] Task initiated on local node
[2026-06-03T20:58:27.089754Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.090546Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.093752Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0013] Task initiated on local node
[2026-06-03T20:58:27.154814Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.155680Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.158499Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0013] Task initiated on local node
[2026-06-03T20:58:27.187582Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.187680Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.187709Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.188579Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.188912Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.189316Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.192088Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0004] Task initiated on local node
[2026-06-03T20:58:27.193961Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-06-03T20:58:27.194860Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-06-03T20:58:27.221377Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.222465Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.222943Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.223081Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.225152Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.225655Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.225926Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0010] Task initiated on local node
[2026-06-03T20:58:27.229059Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-06-03T20:58:27.229735Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0003] Task initiated on local node
[2026-06-03T20:58:27.290301Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.290964Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.293873Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0001] Task initiated on local node
[2026-06-03T20:58:27.306785Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.307382Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.310250Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0011] Task initiated on local node
[2026-06-03T20:58:27.323296Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.323895Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.326662Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-06-03T20:58:27.339844Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.340422Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.343105Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-06-03T20:58:27.372437Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.373075Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.376224Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0014] Task initiated on local node
[2026-06-03T20:58:27.405287Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.405870Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.408706Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-06-03T20:58:27.670489Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.671143Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.674119Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-06-03T20:58:27.835529Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.836079Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.839141Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0009] Task initiated on local node
[2026-06-03T20:58:27.868091Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.868829Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.871435Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-06-03T20:58:27.900626Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.901179Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.903733Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-06-03T20:58:27.933221Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.933777Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.936502Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-06-03T20:58:27.937295Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.937718Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.940333Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-06-03T20:58:27.969604Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.969675Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.970202Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.970763Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.974314Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0008] Task initiated on local node
[2026-06-03T20:58:27.979969Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.980458Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.983137Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-06-03T20:58:27.988222Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.988713Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.990892Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0000] Task initiated on local node
[2026-06-03T20:58:28.021427Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.021507Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.022129Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.024713Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0001] Task initiated on local node
[2026-06-03T20:58:28.053884Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.118019Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.118682Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.121422Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0010] Task initiated on local node
[2026-06-03T20:58:28.150535Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.314786Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.315224Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.317878Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0006] Task initiated on local node
[2026-06-03T20:58:28.347108Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.617505Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0006] Task initiated on local node
[2026-06-03T20:58:28.661938Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.662004Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.662513Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.662944Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.665971Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0008] Task initiated on local node
[2026-06-03T20:58:28.666542Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-06-03T20:58:28.695135Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.695198Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.009835Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.010361Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.013155Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0006] Task initiated on local node
[2026-06-03T20:58:29.042134Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.074098Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.074531Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.076906Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0003] Task initiated on local node
[2026-06-03T20:58:29.106423Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.106696Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.106810Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.107097Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.107313Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.111040Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-03T20:58:29.112294Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-03T20:58:29.112874Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-03T20:58:29.140203Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.140269Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.140291Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.140474Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.140768Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.143174Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-03T20:58:29.167921Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-03T20:58:29.172936Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.173001Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.173195Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.175254Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-03T20:58:29.205049Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:33.377919Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-03T20:58:41.654932Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-03T20:58:41.654932Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] 
[2026-06-03T20:58:41.654932Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-03T20:58:41.654995Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] 
[2026-06-03T20:58:41.655001Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-03T20:58:41.655007Z] [nf-575e69a67a48dbc726f2e0fd06172371-e155c-vjjj5] [576_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec