Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/10/cccc0e2a16f9abc6e5b89967edb51f/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/28/9b07206464e732a00b7bf74852ddd6/HCC1395_BL.recalibrated.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/28/9b07206464e732a00b7bf74852ddd6/HCC1395_BL.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr20_14085521-14085828.bed.gz.tbi
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr20_14085521-14085828.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/10/cccc0e2a16f9abc6e5b89967edb51f/.command.run
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-03T20:58:22.582231Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-03T20:58:22.583053Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-03T20:58:22.583065Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-03T20:58:22.583069Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-03T20:58:22.583073Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXcQGMkV'
[2026-06-03T20:58:22.583077Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-03T20:58:22.583082Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-03T20:58:22.583085Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-03T20:58:22.583089Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-03T20:58:22.583092Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-03T20:58:22.583096Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-03T20:58:22.583100Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-03T20:58:22.583104Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-03T20:58:22.583107Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-03T20:58:22.583858Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-03T20:58:22.583962Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-03T20:58:22.589614Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-03T20:58:22.590399Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-03T20:58:22.590579Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-03T20:58:22.590752Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-03T20:58:22.590989Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.591465Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.591564Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.591637Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.591753Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.591820Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.591938Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.591999Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.592424Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.592557Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.592679Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.592804Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.593027Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.593605Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.593763Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.595341Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.595583Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-03T20:58:22.595793Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.595930Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.595995Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.596181Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.596248Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.596361Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.596431Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.596562Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.596625Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.596739Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.596899Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.597216Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.597289Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.597401Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.597467Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.597585Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.597650Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.597761Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.597825Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.597944Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.598007Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.598117Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.598194Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.598565Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.598798Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.598909Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.598975Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.599081Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.599144Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.599256Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.599322Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.599501Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.599582Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.599729Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.599793Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.600112Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.600455Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.600568Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.600632Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.600741Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.600805Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.600911Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.600973Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.601108Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.601199Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.601323Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.601390Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.601590Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.602050Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.602160Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.602221Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.602778Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.602845Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.602954Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.603017Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.603198Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.603714Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.604943Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.605465Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.605595Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.605666Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.605777Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.605840Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.605954Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.606016Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.606128Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.606189Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.606300Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.606369Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.606701Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.607249Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.607368Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.607431Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.607546Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.607612Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.607722Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.607785Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.607910Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.607973Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.608085Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.608147Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.623309Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.623836Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.623961Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.624142Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.625175Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.625332Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.625420Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.625529Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.625596Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.625758Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.625976Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.626224Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.626408Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-03T20:58:22.626898Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.627483Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.628569Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.629782Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.630838Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.633063Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0010] Task initiated on local node
[2026-06-03T20:58:22.633640Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.636914Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0015] Task initiated on local node
[2026-06-03T20:58:22.639203Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0001] Task initiated on local node
[2026-06-03T20:58:22.644122Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0000] Task initiated on local node
[2026-06-03T20:58:22.644814Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0012] Task initiated on local node
[2026-06-03T20:58:22.647172Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-06-03T20:58:22.650357Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0007] Task initiated on local node
[2026-06-03T20:58:22.651708Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-03T20:58:22.765523Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.766496Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.769624Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0009] Task initiated on local node
[2026-06-03T20:58:22.980931Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.982055Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.985238Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-06-03T20:58:23.046332Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.047362Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.050432Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0014] Task initiated on local node
[2026-06-03T20:58:23.161536Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.162577Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.165647Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0002] Task initiated on local node
[2026-06-03T20:58:23.377156Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.378221Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.381311Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-06-03T20:58:23.442483Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.443436Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.446358Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-06-03T20:58:23.557685Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.558580Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.561426Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0000] Task initiated on local node
[2026-06-03T20:58:23.722855Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.723670Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.726273Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-03T20:58:23.755753Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.756611Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.758933Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-06-03T20:58:23.788561Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.789420Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.791973Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-06-03T20:58:23.853621Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.854480Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.856753Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0007] Task initiated on local node
[2026-06-03T20:58:23.886457Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.887306Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.889794Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-06-03T20:58:23.951437Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.951500Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.951521Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.952301Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.952542Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.952968Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.955740Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0014] Task initiated on local node
[2026-06-03T20:58:23.956872Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0012] Task initiated on local node
[2026-06-03T20:58:23.957853Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-06-03T20:58:23.986376Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.986442Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.986464Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.987217Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.987441Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.987897Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.991419Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-06-03T20:58:23.992558Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0006] Task initiated on local node
[2026-06-03T20:58:23.993725Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0005] Task initiated on local node
[2026-06-03T20:58:24.052646Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.053472Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.055979Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0003] Task initiated on local node
[2026-06-03T20:58:24.085363Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.086208Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.088812Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0009] Task initiated on local node
[2026-06-03T20:58:24.118102Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.118183Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.118982Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.119260Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.122811Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0016] Task initiated on local node
[2026-06-03T20:58:24.123470Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-03T20:58:24.434947Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.435891Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.438802Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-03T20:58:24.650460Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.651499Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.654792Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_002_chr3_0000] Task initiated on local node
[2026-06-03T20:58:24.715646Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.716529Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.719382Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0010] Task initiated on local node
[2026-06-03T20:58:24.748452Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.749327Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.751800Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0000] Task initiated on local node
[2026-06-03T20:58:24.765037Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.765848Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.768706Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0011] Task initiated on local node
[2026-06-03T20:58:24.797797Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.798623Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.801477Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0001] Task initiated on local node
[2026-06-03T20:58:24.962895Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.963800Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.966306Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0005] Task initiated on local node
[2026-06-03T20:58:24.995766Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.996588Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.999342Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-06-03T20:58:25.060861Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.061733Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.064387Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-06-03T20:58:25.125876Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.126664Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.129259Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-06-03T20:58:25.158509Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.159259Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.161972Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0006] Task initiated on local node
[2026-06-03T20:58:25.191117Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.191895Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.194268Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-03T20:58:25.306127Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.306968Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.310162Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-06-03T20:58:25.371223Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.371296Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.371987Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.372274Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.375490Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0016] Task initiated on local node
[2026-06-03T20:58:25.376643Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0004] Task initiated on local node
[2026-06-03T20:58:25.436787Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.437617Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.440418Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-03T20:58:25.501783Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.502597Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.505314Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0001] Task initiated on local node
[2026-06-03T20:58:25.510494Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.511310Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.513922Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0000] Task initiated on local node
[2026-06-03T20:58:25.543292Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.543344Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.544018Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.544466Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.547262Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0002] Task initiated on local node
[2026-06-03T20:58:25.548113Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0003] Task initiated on local node
[2026-06-03T20:58:25.577691Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.578448Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.580976Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-06-03T20:58:25.610423Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.611202Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.613902Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-06-03T20:58:25.643316Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.643384Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.644073Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.644339Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.647122Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0001] Task initiated on local node
[2026-06-03T20:58:25.675754Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-06-03T20:58:25.676810Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.677736Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.678010Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.680405Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.681097Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0008] Task initiated on local node
[2026-06-03T20:58:25.683121Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-03T20:58:25.712304Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.713059Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.715561Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-06-03T20:58:25.745026Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.745785Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.748706Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0004] Task initiated on local node
[2026-06-03T20:58:25.960351Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.961190Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.963942Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0003] Task initiated on local node
[2026-06-03T20:58:25.993069Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.993797Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.996334Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-06-03T20:58:26.057805Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.058533Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.061652Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-06-03T20:58:26.122619Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.123353Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.126142Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-06-03T20:58:26.155698Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.156409Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.159386Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0002] Task initiated on local node
[2026-06-03T20:58:26.188430Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.189125Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.192113Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-06-03T20:58:26.221325Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.221980Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.224468Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-03T20:58:26.286006Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.286712Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.289306Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-06-03T20:58:26.318608Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.319262Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.321935Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0003] Task initiated on local node
[2026-06-03T20:58:26.334995Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.335643Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.338190Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0011] Task initiated on local node
[2026-06-03T20:58:26.367555Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.368223Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.370917Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-06-03T20:58:26.400117Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.400832Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.403555Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0002] Task initiated on local node
[2026-06-03T20:58:26.464831Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.465496Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.468204Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-06-03T20:58:26.529488Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.530151Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.533006Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0001] Task initiated on local node
[2026-06-03T20:58:26.644435Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.645113Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.648163Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0013] Task initiated on local node
[2026-06-03T20:58:26.809820Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.810507Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.813407Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0004] Task initiated on local node
[2026-06-03T20:58:26.842608Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.843263Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.846071Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-06-03T20:58:26.907631Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.908294Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.910853Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-06-03T20:58:26.940257Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.940897Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.943781Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0008] Task initiated on local node
[2026-06-03T20:58:26.973041Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.973661Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.976351Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-03T20:58:27.238332Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.238984Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.241937Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0000] Task initiated on local node
[2026-06-03T20:58:27.303563Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.304158Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.306724Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0000] Task initiated on local node
[2026-06-03T20:58:27.336154Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.336723Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.339622Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0003] Task initiated on local node
[2026-06-03T20:58:27.368804Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.369390Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.371950Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-06-03T20:58:27.483449Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.484005Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.486983Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-03T20:58:27.499899Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.500415Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.502497Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0013] Task initiated on local node
[2026-06-03T20:58:27.516109Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.516615Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.519553Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-06-03T20:58:27.532722Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.533249Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.535586Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0015] Task initiated on local node
[2026-06-03T20:58:27.565409Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.565928Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.568393Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-06-03T20:58:27.573669Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.574166Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.576649Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-03T20:58:27.589928Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.590385Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.592772Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-03T20:58:27.594191Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.594682Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.597126Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-06-03T20:58:27.610421Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.610897Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.613325Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-06-03T20:58:27.618731Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.626338Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.658071Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.658479Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.660879Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0001] Task initiated on local node
[2026-06-03T20:58:27.662240Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.662677Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.664817Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-06-03T20:58:27.694437Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.694498Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.858692Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.858757Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.859186Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.859596Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.862103Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0004] Task initiated on local node
[2026-06-03T20:58:27.863008Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0002] Task initiated on local node
[2026-06-03T20:58:27.891963Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.892022Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.910544Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.911042Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.913639Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0002] Task initiated on local node
[2026-06-03T20:58:29.942945Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:34.817175Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:34.817704Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:34.820282Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0003] Task initiated on local node
[2026-06-03T20:58:34.849618Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:34.849885Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:34.850002Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-03T20:58:34.850275Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:34.850771Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:34.853845Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-03T20:58:34.855208Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-03T20:58:34.856115Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-03T20:58:34.883444Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:34.883496Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:34.883518Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:34.883697Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:34.884162Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:34.886657Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-03T20:58:34.887519Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-03T20:58:34.916847Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:34.916900Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:34.917071Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T20:58:34.919330Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-03T20:58:34.949134Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:41.566307Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-03T20:58:55.702217Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-03T20:58:55.702217Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] 
[2026-06-03T20:58:55.702217Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-03T20:58:55.702283Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] 
[2026-06-03T20:58:55.702290Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-03T20:58:55.702297Z] [nf-10cccc0e2a16f9abc6e5b89967edb51f-741ab-hvfpg] [559_1] [WorkflowRunner] Elapsed time for full workflow: 33 sec