File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/787e1d13a7d031ca70c47bd4195b31/.command.err
Size
60.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_1;chr9_110971973-110972217.bed)
Attempt

Content

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[2026-06-03T20:58:18.600705Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-03T20:58:18.601522Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-03T20:58:18.601536Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-03T20:58:18.601541Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-03T20:58:18.601545Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXINbbNc'
[2026-06-03T20:58:18.601549Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-03T20:58:18.601556Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-03T20:58:18.601560Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-03T20:58:18.601565Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-03T20:58:18.601569Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-03T20:58:18.601574Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-03T20:58:18.601578Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-03T20:58:18.601582Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-03T20:58:18.601586Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-03T20:58:18.602133Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-03T20:58:18.602243Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-03T20:58:18.607958Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-03T20:58:18.608565Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-03T20:58:18.608819Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-03T20:58:18.609134Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-03T20:58:18.609382Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.610056Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.610150Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.610223Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.610340Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.610407Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.610588Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.610766Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.611172Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.611300Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.611384Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.611769Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.612152Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.612350Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.612453Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.612633Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.614067Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.614828Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-03T20:58:18.615103Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.615381Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.615755Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.615830Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.615946Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.616014Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.616128Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.616192Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.616619Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.616737Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.617120Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.617188Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.617300Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.617368Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.617489Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.617552Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.617664Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.617781Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.617900Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.617968Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.618088Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.618198Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.618390Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.618846Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.619244Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.619312Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.619419Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.619481Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.619592Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.619707Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.619821Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.619887Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.619995Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.620059Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.620167Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.620288Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.620799Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.620871Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.621004Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.621071Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.621180Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.621246Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.621358Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.621419Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.621544Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.621622Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.636327Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.636769Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.636838Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.636997Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.637067Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.637151Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.637217Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.637325Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.637393Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T20:58:18.637439Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-03T20:58:18.639852Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.640981Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.643569Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.644012Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-06-03T20:58:18.645265Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.645643Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.646099Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.647021Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.648993Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-06-03T20:58:18.649200Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.649994Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.654811Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-06-03T20:58:18.657192Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-06-03T20:58:18.661007Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-06-03T20:58:18.663799Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-06-03T20:58:18.663900Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-06-03T20:58:18.715765Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.716439Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.719266Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-06-03T20:58:18.724139Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.724752Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.727503Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-06-03T20:58:18.740676Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.741316Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.744787Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-06-03T20:58:18.749275Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.749899Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.753457Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-06-03T20:58:19.165249Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.165345Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.166091Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.166381Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.169211Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-06-03T20:58:19.170418Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-06-03T20:58:19.198361Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.199086Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.202001Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-06-03T20:58:19.263061Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.263760Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.266116Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-06-03T20:58:19.295628Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.296276Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.298996Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-06-03T20:58:19.360567Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.361255Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.363832Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-06-03T20:58:19.425228Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.425943Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.428895Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-06-03T20:58:19.540295Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.540995Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.543968Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-06-03T20:58:19.572898Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.573550Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.576084Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-06-03T20:58:19.637393Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.638036Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.640593Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-06-03T20:58:19.702025Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.702620Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.705840Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-06-03T20:58:19.866963Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.867592Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.870427Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-06-03T20:58:19.947711Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-06-03T20:58:19.981785Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.981848Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.981872Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.982403Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.982635Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.983254Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.986088Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-06-03T20:58:19.987393Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-06-03T20:58:19.988577Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-06-03T20:58:20.016696Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.017569Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.018003Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.018990Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.021317Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-06-03T20:58:20.022322Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-06-03T20:58:20.034834Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.035362Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.038000Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-06-03T20:58:20.099266Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.099857Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.102846Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-06-03T20:58:20.115842Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.116382Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.118981Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-06-03T20:58:20.132154Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.132224Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.132701Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.132916Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.136072Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-06-03T20:58:20.136914Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-06-03T20:58:20.197276Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.197825Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.200428Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-06-03T20:58:20.229979Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.230516Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.233019Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-06-03T20:58:20.344666Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.345207Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.347741Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-06-03T20:58:20.348794Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.349223Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.351676Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-06-03T20:58:20.364907Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.365414Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.368023Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-06-03T20:58:20.381116Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.381622Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.383958Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-06-03T20:58:20.389351Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.389865Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.392461Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-06-03T20:58:20.397546Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.398023Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.400557Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-06-03T20:58:20.413868Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.414530Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.417153Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-06-03T20:58:20.430270Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.430962Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.433522Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-06-03T20:58:20.446683Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.447312Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.449952Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-06-03T20:58:20.463044Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.463654Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.466424Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-06-03T20:58:20.495745Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.496388Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.499156Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-06-03T20:58:20.528440Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.528918Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.531749Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-06-03T20:58:20.560853Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.561322Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.564120Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-06-03T20:58:20.593327Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.593803Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.596483Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-06-03T20:58:20.708270Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.708768Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.711526Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-06-03T20:58:20.740860Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.741295Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.743874Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-06-03T20:58:20.773057Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.773510Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.776354Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-06-03T20:58:20.789389Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.789842Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.792612Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-06-03T20:58:20.821856Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.822277Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.825248Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-06-03T20:58:20.830020Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.830434Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.833052Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-06-03T20:58:20.862168Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.862233Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.862588Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.865051Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-06-03T20:58:20.894573Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.958591Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.958968Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.961428Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-06-03T20:58:20.990763Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.205131Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.205493Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.207793Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-06-03T20:58:21.222201Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.222593Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.224826Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-06-03T20:58:21.238398Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.254077Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.368196Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.368554Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.370959Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-06-03T20:58:21.400435Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.514620Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.514974Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.517342Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-06-03T20:58:21.546958Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.711147Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.711507Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.713633Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-06-03T20:58:21.743362Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.743584Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.743700Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.743921Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.744139Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.747758Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-03T20:58:21.748791Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-03T20:58:21.749981Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-03T20:58:21.776295Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.776351Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.776373Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.776548Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.776854Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.779021Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-03T20:58:21.802807Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-03T20:58:21.808981Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.809033Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.809195Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.811409Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-03T20:58:21.841224Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.260750Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-03T20:58:29.137421Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-03T20:58:29.137421Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] 
[2026-06-03T20:58:29.137421Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-03T20:58:29.137462Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] 
[2026-06-03T20:58:29.137469Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-03T20:58:29.137474Z] [nf-af787e1d13a7d031ca70c47bd4195b31-31e2b-bx2vt] [561_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec