cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta -t 12 --interval chr14_64122012-64122133.bed.gz -i Sig_18_Blood.recalibrated.bam --algo Haplotyper -d dbsnp_146.hg38.vcf.gz --emit_mode variant germline_control_2.haplotyper.chr14_64122012-64122133.bed.unfiltered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr14:101760685, elapsed 0.0s, est remaining 0.8s, peak mem 81MB, user 0.1s, sys 0.1s, output queue size 2373
progress 10% @chr15:40899144, elapsed 0.1s, est remaining 0.7s, peak mem 90MB, user 0.1s, sys 0.2s, output queue size 2140
progress 15% @chr15:63908520, elapsed 0.1s, est remaining 0.7s, peak mem 105MB, user 0.1s, sys 0.4s, output queue size 4762
progress 20% @chr15:87980531, elapsed 0.2s, est remaining 0.6s, peak mem 112MB, user 0.2s, sys 0.6s, output queue size 7047
progress 25% @chr16:1941257, elapsed 0.2s, est remaining 0.6s, peak mem 121MB, user 0.2s, sys 0.7s, output queue size 8733
progress 30% @chr16:23482923, elapsed 0.2s, est remaining 0.5s, peak mem 130MB, user 0.2s, sys 0.9s, output queue size 11212
progress 35% @chr16:66566514, elapsed 0.3s, est remaining 0.5s, peak mem 141MB, user 0.3s, sys 1.2s, output queue size 13819
progress 40% @chr16:89286670, elapsed 0.3s, est remaining 0.5s, peak mem 151MB, user 0.3s, sys 1.4s, output queue size 16292
progress 45% @chr17:10309522, elapsed 0.4s, est remaining 0.4s, peak mem 162MB, user 0.3s, sys 1.6s, output queue size 18906
progress 50% @chr17:36260780, elapsed 0.4s, est remaining 0.4s, peak mem 175MB, user 0.4s, sys 1.9s, output queue size 21501
progress 55% @chr17:45102951, elapsed 0.4s, est remaining 0.4s, peak mem 184MB, user 0.4s, sys 2.1s, output queue size 23744
progress 60% @chr17:68347125, elapsed 0.5s, est remaining 0.3s, peak mem 193MB, user 0.4s, sys 2.2s, output queue size 26276
progress 65% @chr18:5478241, elapsed 0.5s, est remaining 0.3s, peak mem 204MB, user 0.5s, sys 2.4s, output queue size 28993
progress 70% @chr18:62574057, elapsed 0.6s, est remaining 0.3s, peak mem 219MB, user 0.5s, sys 2.6s, output queue size 31374
progress 75% @chr19:6904036, elapsed 0.6s, est remaining 0.2s, peak mem 229MB, user 0.5s, sys 2.8s, output queue size 33763
progress 80% @chr19:15256064, elapsed 0.7s, est remaining 0.2s, peak mem 235MB, user 0.6s, sys 3.0s, output queue size 36017
progress 85% @chr19:36996317, elapsed 0.7s, est remaining 0.1s, peak mem 247MB, user 0.6s, sys 3.1s, output queue size 38339
progress 90% @chr19:46493558, elapsed 0.8s, est remaining 0.1s, peak mem 253MB, user 0.7s, sys 3.2s, output queue size 40504
progress 95% @chr20:36919328, elapsed 0.9s, est remaining 0.0s, peak mem 261MB, user 0.7s, sys 3.4s, output queue size 43143
progress 100% @chr20:64031918, elapsed 1.0s, est remaining 0.0s, peak mem 268MB, user 0.8s, sys 3.5s, output queue size 45582
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 12 max 192
algo: Haplotyper
license: sentieon:Haplotyper=12
input file size: 74586797
output file size: 22310
reads: 1001133
contig: 48152 intervals 9000028 bases
active: 97912 calls 0.000 user 0.010 sys 0.018 real
advance: 49760 calls 0.019 user 0.006 sys 0.024 real
calc: 97912 calls 0.009 user 0.008 sys 0.018 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.003 user 0.000 sys 2.291 real
fetch: 97912 calls 0.004 user 0.000 sys 0.018 real
fetch_ref: 97912 calls 0.089 user 0.065 sys 0.337 real
idle: 51 calls 0.003 user 0.002 sys 27.856 real
init: 1 calls 0.044 user 0.003 sys 0.042 real
region: 97912 calls 0.000 user 0.017 sys 0.020 real
tracker: 97912 calls 0.010 user 0.029 sys 0.087 real
overall: 286494720 mem 1.269 user 4.938 sys 3.407 real
ls: cannot access '*.g.vcf.gz': No such file or directory
ls: cannot access '*.g.vcf.gz.tbi': No such file or directory