File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/420eb84a371cfd942b21c1d4fcd22d/.command.err
Size
60.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_2;chr9_110971973-110972217.bed)
Attempt

Content

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[2026-06-03T20:58:21.561727Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-03T20:58:21.562589Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-03T20:58:21.562601Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-03T20:58:21.562605Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-03T20:58:21.562609Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXmLTNXa'
[2026-06-03T20:58:21.562613Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-03T20:58:21.562618Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-03T20:58:21.562621Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-03T20:58:21.562625Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-03T20:58:21.562629Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-03T20:58:21.562632Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-03T20:58:21.562636Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-03T20:58:21.562639Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-03T20:58:21.562643Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-03T20:58:21.563274Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-03T20:58:21.563367Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-03T20:58:21.569122Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-03T20:58:21.569789Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-03T20:58:21.569994Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-03T20:58:21.570169Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-03T20:58:21.570380Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.571017Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.571103Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.571174Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.571289Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.571354Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.571494Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.571608Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.571871Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.572137Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.572276Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.572530Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.573048Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.573659Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.574943Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.575229Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-03T20:58:21.575628Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.575703Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.575818Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.575882Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.576069Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.576137Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.576292Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.576379Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.576504Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.576716Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.577408Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.577477Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.577588Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.577653Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.577760Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.577828Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.577953Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.578015Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.578148Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.578416Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.578942Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.579248Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.579366Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.579430Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.579543Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.579608Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.579721Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.579784Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.579888Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.579950Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.580066Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.580129Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.580324Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.580450Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.580933Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.581000Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.581115Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.581179Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.581292Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.581353Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.581464Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.581529Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.581640Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.581705Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.581818Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.581970Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.582477Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.582544Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.596917Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.597418Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.597487Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.597647Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.597726Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.597810Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.597876Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.597982Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.598048Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.598094Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-03T20:58:21.600618Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.601196Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.602570Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.602879Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.603380Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.603783Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.604374Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.605236Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.606160Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.613034Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-06-03T20:58:21.616744Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-06-03T20:58:21.619628Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-06-03T20:58:21.621842Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-06-03T20:58:21.622262Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-06-03T20:58:21.622884Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-06-03T20:58:21.675510Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-06-03T20:58:21.720609Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.720683Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.720717Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.721396Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.721733Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.723493Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.724442Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-06-03T20:58:21.727840Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-06-03T20:58:21.728399Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-06-03T20:58:21.755560Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.756249Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.758875Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-06-03T20:58:21.788188Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.788944Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.792381Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-06-03T20:58:22.103706Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.104536Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.107548Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-06-03T20:58:22.169213Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.169968Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.172692Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-06-03T20:58:22.234082Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.234801Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.237467Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-06-03T20:58:22.399274Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.400058Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.402591Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-06-03T20:58:22.431963Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.432053Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.432698Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.432917Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.436102Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-06-03T20:58:22.436789Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-06-03T20:58:22.848290Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.849034Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.851930Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-06-03T20:58:22.873426Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-06-03T20:58:22.880896Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.880967Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.880989Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.881585Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.881871Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.882146Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.885291Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-06-03T20:58:22.886727Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-06-03T20:58:22.887899Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-06-03T20:58:22.915302Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.915378Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.915411Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.915982Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.916169Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.916474Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.920881Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-06-03T20:58:22.922009Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-06-03T20:58:22.922869Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-06-03T20:58:22.949423Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.949494Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.950065Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.950528Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.953896Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-06-03T20:58:23.060569Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-06-03T20:58:23.065296Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.065990Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.068781Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-06-03T20:58:23.097980Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.098662Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.101441Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-06-03T20:58:23.313205Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.313304Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.313929Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.314256Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.317305Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-06-03T20:58:23.346010Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-06-03T20:58:23.346821Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.346887Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.347415Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.347665Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.350493Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-06-03T20:58:23.351583Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-06-03T20:58:23.379895Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.380956Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.381706Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.382737Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.385491Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-06-03T20:58:23.386461Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-06-03T20:58:23.446723Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.447352Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.450626Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-06-03T20:58:23.511580Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.511658Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.512222Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.512719Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.515439Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-06-03T20:58:23.516498Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-06-03T20:58:23.544786Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.544857Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.545382Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.545784Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.548797Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-06-03T20:58:23.549878Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-06-03T20:58:23.610075Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.610149Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.610700Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.612610Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.614665Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-06-03T20:58:23.615667Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-06-03T20:58:23.645071Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.645140Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.645643Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.645896Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.649334Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-06-03T20:58:23.649791Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-06-03T20:58:23.678156Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.678226Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.678772Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.679377Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.682383Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-06-03T20:58:23.683144Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-06-03T20:58:23.712120Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.712204Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.712228Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.712727Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.714350Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.714837Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.715734Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-06-03T20:58:23.717888Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-06-03T20:58:23.718699Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-06-03T20:58:23.747122Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.747193Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.747221Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.747663Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.748200Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.749629Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.750264Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-06-03T20:58:23.752490Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-06-03T20:58:23.753436Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-06-03T20:58:23.781741Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.782211Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.784119Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.784754Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-06-03T20:58:23.784873Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.787446Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-06-03T20:58:23.800726Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.801153Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.803519Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-06-03T20:58:23.833011Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.833085Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.833546Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.834040Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.834223Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.837066Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-06-03T20:58:23.838057Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-06-03T20:58:23.867878Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.867948Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.868321Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.870842Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-06-03T20:58:23.875966Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.907763Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.071857Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.072241Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.074417Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-06-03T20:58:24.104999Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.269289Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.269664Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.271879Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-06-03T20:58:24.301802Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.516385Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.516805Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.519447Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-06-03T20:58:24.549274Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.964166Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.964605Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.967303Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-06-03T20:58:24.996673Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.996908Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.997031Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.997281Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.997592Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.001992Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-03T20:58:25.003094Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-03T20:58:25.026804Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-03T20:58:25.029573Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.029640Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.029663Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.029851Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.030177Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.032408Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-03T20:58:25.033513Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-03T20:58:25.062038Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.062103Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.062277Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.064428Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-03T20:58:25.094337Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.213151Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-03T20:58:32.098420Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-03T20:58:32.098420Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] 
[2026-06-03T20:58:32.098420Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-03T20:58:32.098466Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] 
[2026-06-03T20:58:32.098473Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-03T20:58:32.098479Z] [nf-1f420eb84a371cfd942b21c1d4fcd22d-0dd83-tjlmz] [620_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec