File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/77b89721bb0caebd8063fd6bfea220/.command.err
Size
87.7 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr12_102480219-102480663.bed)
Attempt

Content

View in new tab 
[2026-06-03T20:58:22.413930Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-03T20:58:22.414650Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-03T20:58:22.414660Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-03T20:58:22.414665Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-03T20:58:22.414669Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXaAzmnn'
[2026-06-03T20:58:22.414672Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-03T20:58:22.414677Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-03T20:58:22.414680Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-03T20:58:22.414684Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] [RunParameters] memMb: 386708
[2026-06-03T20:58:22.414687Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-03T20:58:22.414691Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-03T20:58:22.414694Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-03T20:58:22.414698Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-03T20:58:22.414701Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-03T20:58:22.415496Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-03T20:58:22.415569Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-03T20:58:22.421091Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-03T20:58:22.421690Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-03T20:58:22.421842Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-03T20:58:22.422081Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-03T20:58:22.422231Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.423076Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.423474Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.423615Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.423771Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.424366Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.424575Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.425807Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.426049Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.426414Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-03T20:58:22.426771Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.426934Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.427051Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.427112Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.427225Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.427287Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.427398Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.427461Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.427568Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.427629Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.427800Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.427863Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.428202Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.428419Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.428530Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.428588Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.428710Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.428773Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.428880Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.428942Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.429047Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.429152Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.429263Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.429323Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.429443Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.429569Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.429954Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.430016Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.430161Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.430222Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.430335Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.430394Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.430502Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.430566Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.430671Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.430734Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.430849Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.430916Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.431161Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.431621Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.431732Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.431794Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.431904Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.431966Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.432075Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.432133Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.432243Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.432308Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.432412Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.432473Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.432581Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.432673Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.432893Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.433377Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.433490Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.433554Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.433661Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.433722Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.433829Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.433892Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.433998Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.434062Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.434167Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.434229Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.435548Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.436159Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.436298Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.436368Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.436478Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.436542Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.436654Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.436713Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.436825Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.436886Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.436997Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.437061Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.437206Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.437368Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.437613Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.438271Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.439008Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.439074Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.439180Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.439242Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.439351Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.439411Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.439520Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.439581Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.454745Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.455186Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.455313Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.455592Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.455874Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.456712Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.456830Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.457065Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.457141Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.457515Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.457690Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.458034Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.458199Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T20:58:22.458467Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-03T20:58:22.458795Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.459914Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.461220Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.462583Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.464819Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.467540Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0002] Task initiated on local node
[2026-06-03T20:58:22.469636Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0001] Task initiated on local node
[2026-06-03T20:58:22.472987Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node
[2026-06-03T20:58:22.475427Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0007] Task initiated on local node
[2026-06-03T20:58:22.478476Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0001] Task initiated on local node
[2026-06-03T20:58:22.483430Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0004] Task initiated on local node
[2026-06-03T20:58:22.484277Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0009] Task initiated on local node
[2026-06-03T20:58:22.484363Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0006] Task initiated on local node
[2026-06-03T20:58:22.548395Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.549328Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.553174Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0003] Task initiated on local node
[2026-06-03T20:58:22.553961Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.554824Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.559184Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node
[2026-06-03T20:58:22.619876Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.619981Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.620947Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.621401Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.624496Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node
[2026-06-03T20:58:22.625401Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0004] Task initiated on local node
[2026-06-03T20:58:23.137249Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.138163Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.141219Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0003] Task initiated on local node
[2026-06-03T20:58:23.202790Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.203844Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.206735Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0000] Task initiated on local node
[2026-06-03T20:58:23.268309Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.269360Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.272375Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node
[2026-06-03T20:58:23.333755Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.334814Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.337965Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0005] Task initiated on local node
[2026-06-03T20:58:23.367052Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.368081Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.370785Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node
[2026-06-03T20:58:23.432339Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.433385Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.436260Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0007] Task initiated on local node
[2026-06-03T20:58:23.497709Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.498639Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.501190Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0008] Task initiated on local node
[2026-06-03T20:58:23.763342Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.764364Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.767187Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0004] Task initiated on local node
[2026-06-03T20:58:23.828612Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.828692Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.829649Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.830305Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.833556Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node
[2026-06-03T20:58:23.834588Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node
[2026-06-03T20:58:23.895806Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.895904Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.896835Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.897416Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.900742Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0002] Task initiated on local node
[2026-06-03T20:58:23.901839Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0004] Task initiated on local node
[2026-06-03T20:58:23.963646Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.964641Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.967465Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0007] Task initiated on local node
[2026-06-03T20:58:24.029323Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.030309Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.033099Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0007] Task initiated on local node
[2026-06-03T20:58:24.062811Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.063767Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.065759Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.066739Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0000] Task initiated on local node
[2026-06-03T20:58:24.067049Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.069979Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0006] Task initiated on local node
[2026-06-03T20:58:24.131507Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.132465Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.135126Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0000] Task initiated on local node
[2026-06-03T20:58:24.164627Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.165559Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.168094Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0006] Task initiated on local node
[2026-06-03T20:58:24.531866Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.531995Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.532878Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.534590Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.536464Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0003] Task initiated on local node
[2026-06-03T20:58:24.537264Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0006] Task initiated on local node
[2026-06-03T20:58:24.567074Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.567989Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.570975Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0008] Task initiated on local node
[2026-06-03T20:58:24.632773Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.633710Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.636387Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0002] Task initiated on local node
[2026-06-03T20:58:25.148860Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.149783Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.152914Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node
[2026-06-03T20:58:25.214323Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.215187Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.217867Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node
[2026-06-03T20:58:25.279256Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.279345Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.280267Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.281045Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.283646Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0007] Task initiated on local node
[2026-06-03T20:58:25.284879Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0004] Task initiated on local node
[2026-06-03T20:58:25.315696Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.315770Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.315794Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.316573Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.317267Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.319744Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.320010Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node
[2026-06-03T20:58:25.322893Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0008] Task initiated on local node
[2026-06-03T20:58:25.349814Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0001] Task initiated on local node
[2026-06-03T20:58:25.352343Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.353192Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.356312Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0003] Task initiated on local node
[2026-06-03T20:58:25.417647Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.418563Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.421749Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node
[2026-06-03T20:58:25.483163Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.483265Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.484086Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.484699Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.487420Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node
[2026-06-03T20:58:25.488702Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0004] Task initiated on local node
[2026-06-03T20:58:25.548799Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.548885Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.549685Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.550234Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.553935Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0005] Task initiated on local node
[2026-06-03T20:58:25.554859Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node
[2026-06-03T20:58:25.615015Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.615121Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.615955Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.616553Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.619315Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node
[2026-06-03T20:58:25.620021Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_011_chr12_0000] Task initiated on local node
[2026-06-03T20:58:25.650858Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.651678Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.654612Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0003] Task initiated on local node
[2026-06-03T20:58:25.667784Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.668585Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.670978Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0001] Task initiated on local node
[2026-06-03T20:58:25.700887Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.701666Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.704320Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node
[2026-06-03T20:58:25.733802Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.733894Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.734634Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.734867Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.737431Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0009] Task initiated on local node
[2026-06-03T20:58:25.738400Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.738642Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0002] Task initiated on local node
[2026-06-03T20:58:25.739424Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.741785Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0006] Task initiated on local node
[2026-06-03T20:58:25.771631Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.771732Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.771756Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.772456Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.773935Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.774465Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.775075Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node
[2026-06-03T20:58:25.777329Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0005] Task initiated on local node
[2026-06-03T20:58:25.778534Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0001] Task initiated on local node
[2026-06-03T20:58:25.806640Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.806744Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.807440Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.808004Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.810744Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node
[2026-06-03T20:58:25.811895Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0000] Task initiated on local node
[2026-06-03T20:58:25.872303Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.872384Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.873109Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.873679Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.877120Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0000] Task initiated on local node
[2026-06-03T20:58:25.877784Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0003] Task initiated on local node
[2026-06-03T20:58:25.938164Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.938255Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.938278Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.938983Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.940745Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.941379Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.941589Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0006] Task initiated on local node
[2026-06-03T20:58:25.944628Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node
[2026-06-03T20:58:25.945568Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0005] Task initiated on local node
[2026-06-03T20:58:25.973620Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.974342Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.977055Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0006] Task initiated on local node
[2026-06-03T20:58:25.978298Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.978906Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.982028Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0002] Task initiated on local node
[2026-06-03T20:58:26.011067Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.011757Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.014674Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0005] Task initiated on local node
[2026-06-03T20:58:26.043943Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.044634Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.047186Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0006] Task initiated on local node
[2026-06-03T20:58:26.076512Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.077189Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.077812Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.079777Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node
[2026-06-03T20:58:26.080100Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.083008Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0007] Task initiated on local node
[2026-06-03T20:58:26.112163Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.112831Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.115308Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0001] Task initiated on local node
[2026-06-03T20:58:26.177114Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.177850Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.180514Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0001] Task initiated on local node
[2026-06-03T20:58:26.211243Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.211914Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.214589Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0000] Task initiated on local node
[2026-06-03T20:58:26.276322Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.277031Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.279901Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0000] Task initiated on local node
[2026-06-03T20:58:26.309337Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.310372Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.312134Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.312824Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.314122Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0005] Task initiated on local node
[2026-06-03T20:58:26.314978Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node
[2026-06-03T20:58:26.328698Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.329293Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.331914Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0003] Task initiated on local node
[2026-06-03T20:58:26.346397Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.346480Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.347000Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.347651Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.350340Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0005] Task initiated on local node
[2026-06-03T20:58:26.351333Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0008] Task initiated on local node
[2026-06-03T20:58:26.363729Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.364303Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.366749Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0000] Task initiated on local node
[2026-06-03T20:58:26.380351Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.380937Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.383402Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node
[2026-06-03T20:58:26.396931Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.397471Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.400034Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node
[2026-06-03T20:58:26.511901Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.512563Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.515060Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0002] Task initiated on local node
[2026-06-03T20:58:26.545874Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.546481Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.549252Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0002] Task initiated on local node
[2026-06-03T20:58:27.012020Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.012637Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.015102Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0007] Task initiated on local node
[2026-06-03T20:58:27.044693Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.045290Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.047732Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0008] Task initiated on local node
[2026-06-03T20:58:27.077135Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.077721Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.080579Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0004] Task initiated on local node
[2026-06-03T20:58:27.142114Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.142724Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.145424Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0004] Task initiated on local node
[2026-06-03T20:58:27.174816Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.175402Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.177821Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0001] Task initiated on local node
[2026-06-03T20:58:27.207377Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.271559Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.272114Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.275284Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0003] Task initiated on local node
[2026-06-03T20:58:27.336451Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.450689Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.451206Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.453721Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0007] Task initiated on local node
[2026-06-03T20:58:27.483334Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.697725Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.698255Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.700781Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0008] Task initiated on local node
[2026-06-03T20:58:27.730360Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.762312Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.762752Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.765087Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0005] Task initiated on local node
[2026-06-03T20:58:27.794782Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.802606Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.803017Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.805262Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node
[2026-06-03T20:58:27.835081Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.949317Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.949778Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.951870Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0002] Task initiated on local node
[2026-06-03T20:58:27.982487Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.146660Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.147110Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.149398Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node
[2026-06-03T20:58:28.179361Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.179622Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.179736Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.180425Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.181751Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.182521Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-03T20:58:28.185222Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-03T20:58:28.186164Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-03T20:58:28.214387Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.214447Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.214468Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.214639Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.215300Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.217403Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-03T20:58:28.218421Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-03T20:58:28.249123Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.249181Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.249337Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.251503Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-03T20:58:28.281394Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:33.053488Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-03T20:58:41.303074Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-03T20:58:41.303074Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] 
[2026-06-03T20:58:41.303074Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-03T20:58:41.303121Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] 
[2026-06-03T20:58:41.303128Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-03T20:58:41.303134Z] [nf-4377b89721bb0caebd8063fd6bfea220-76a9e-n86bj] [603_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec