File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/5ead200073116c85c6ac5e6c46ab0f/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-hb3kje1z because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 21:03:10,844 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 21:03:11,641 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 21:03:11,808 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 21:03:12,846 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-03 21:03:12,912 - cnv_pipe.batch.run_model - INFO - Processing cluster 998 with 199 probes
2026-06-03 21:03:13,282 - cnv_pipe.batch.run_model.cluster998 - INFO - Child process started for cluster 998 with 199 probes
2026-06-03 21:04:09,884 - cnv_pipe.batch.run_model.cluster998 - INFO - Child process finished cluster 998. Wrote cluster_998_samples.csv and cluster_998_params.csv
2026-06-03 21:04:09,885 - cnv_pipe.batch.run_model - INFO - Cluster 998 finished in 56.97 seconds. Status: SUCCESS