Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/a9fea84dc47327693a565e368f2da4/Sig_18_Blood_altera_v3_targets_noncoding_postQC_hg38.sentieon.hs_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/39/9f09f4c743cdc92465bdf3980605cd/HCC1395_BL_altera_v3_targets_coding_postQC_hg38.sentieon.hs_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/bdb06d598773766367b9b7d1dee966/Sig_18_Blood.sentieon.insert_size_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/cbb1b22e92942c921597c696198305/HCC1395_tumor.sentieon.insert_size_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/27559533e1834e79c992bb5c01a919/HCC1395_BL.mosdepth.summary.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2d/ef941c166b390875b74305292b7c07/HCC1395_BL_foresight_clarity_targets_hg38.sentieon.hs_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/39/c257e669af74077389268bdc32fea4/HCC1395_BL_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/be/c0b9768c3709aea5a5fcbe4a5e020a/Sig_18_Blood.stats
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/43dceecc9fba31a248425539004b9b/HCC1395_tumor_xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/46/a4ba1f14026381ef28231cea07dbb1/HCC1395_BL_FINAL_hotspot_list_07302025_hg38_sorted.sentieon.hs_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/37/b62365879cfeda34ccdd2222f6288b/Sig_18_tissue_foresight_clarity_targets_hg38.sentieon.hs_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d8/76cb6b6f4ce54db4a330500ead3dd6/HCC1395_tumor_foresight_clarity_targets_hg38.sentieon.hs_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/39/5a1eddec122c7a7f8f113d54ab7b84/Sig_18_tissue_xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.sentieon.hs_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/e1f19e9f0563c721b14bdb7b2f17a6/HCC1395_tumor.stats
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/57/f946c5c32afc83c0a3d4783cfa0b31/Sig_18_tissue.mosdepth.summary.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b8/7c5c6a82e361917659b8492b9da556/Sig_18_tissue.sentieon.insert_size_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8f/fc61b389eeee7828b76895380116b8/Sig_18_tissue_altera_v3_targets_coding_postQC_hg38.sentieon.hs_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/07/4721c52671f84da09f3c09d6059de2/Sig_18_tissue_xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/26/114d282d1d21295141844ef0df8ebf/Sig_18_tissue_FINAL_hotspot_list_07302025_hg38_sorted.sentieon.hs_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/30d3d654d9437509a4328454f58dde/HCC1395_tumor.mosdepth.summary.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/cb041f61a49091826906da1ee3d613/Sig_18_Blood_altera_v3_targets_coding_postQC_hg38.sentieon.hs_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/2e9423b31d41147d1ecd8d9fd47b73/Sig_18_Blood.mosdepth.summary.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/ff217088394f04f50543db3962da4a/HCC1395_tumor_altera_v3_targets_noncoding_postQC_hg38.sentieon.hs_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/b0571d3e1657b02df049e50b854196/.command.run
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/26/d15be122b65313d7c3f0764357f82d/Sig_18_Blood_xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.sentieon.hs_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/11d083c1f36c241ab61e7ad35d3783/HCC1395_BL_xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.sentieon.hs_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e6/5942b0a946d5f2d03a98a3fb83dcc3/Sig_18_tissue_altera_v3_targets_noncoding_postQC_hg38.sentieon.hs_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/5d307d909ec04165485247439176ad/Sig_18_Blood_foresight_clarity_targets_hg38.sentieon.hs_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/05741f72461d7deb0fe85ba3bc16ae/Sig_18_tissue_xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.sentieon.hs_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/194793091ec124a7765b9a4512daef/Sig_18_Blood_FINAL_hotspot_list_07302025_hg38_sorted.sentieon.hs_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/b0571d3e1657b02df049e50b854196/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/30/fd30c0a5c8602cc64df121f9121167/HCC1395_tumor_xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.sentieon.hs_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/47/2b945ccfd4acb9616bdb3eb88bb364/HCC1395_BL.stats
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b3/f4f476b76b9fced494ab42312ab523/HCC1395_BL.sentieon.insert_size_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a1/34a924667f6e6ebd0797acf74382a3/Sig_18_tissue.stats
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a1/e67b5bdbdec0f817e2b6c6ed8e972e/HCC1395_tumor_FINAL_hotspot_list_07302025_hg38_sorted.sentieon.hs_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7d/08f457530416c4a33adba6c883fa95/Sig_18_Blood_xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/35004bdf8076b61caf70f05e18e7de/Sig_18_Blood_xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.sentieon.hs_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/97b5772377cafb38348a85b5b901c6/HCC1395_tumor_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/783e5a5626ddd06a0172601e0e151f/Sig_18_Blood_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b8/aba87fc9725b7c9d4f0f114339551a/Sig_18_tissue/Sig_18_tissue_full_basic_stats.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/ce84735f1e67a245deee1b40a99010/HCC1395_tumor_altera_v3_targets_coding_postQC_hg38.sentieon.hs_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2d/e5cf661b7ed0904c5d45ae03a015c3/HCC1395_BL_xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/dab39886c15762b83545c138ec940b/HCC1395_BL/HCC1395_BL_full_basic_stats.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a7/c994ebf94d97fe1b876cc7ef5990f7/HCC1395_tumor_xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.sentieon.hs_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/49564516eed3694e28cc9e82279685/HCC1395_BL_altera_v3_targets_noncoding_postQC_hg38.sentieon.hs_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/dfee9a4a008cfc3b83f15d28160399/HCC1395_BL_xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.sentieon.hs_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/de3c9d40f339c41944c26933acc63e/HCC1395_tumor/HCC1395_tumor_full_basic_stats.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/5eaaac1208efaf529740637effe00e/Sig_18_tissue_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/2cfbc7f860959d8632dcbc98de8d5a/Sig_18_Blood/Sig_18_Blood_full_basic_stats.tsv
==> STAGING COMPLETE (50 inputs)
Post-dedup QC aggregation complete: 4 samples
Tools: samtools, mosdepth, sentieon, seqtool
Output: postdedup_qc.json