File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4f/778f5c4109dedc322c5b22fb115619/.command.err
Size
61.7 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr19_15162349-15162662.bed)
Attempt

Content

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[2026-06-03T20:58:23.933896Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-03T20:58:23.944964Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-03T20:58:23.944993Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-03T20:58:23.944999Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-03T20:58:23.945003Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXX7ZbvFW'
[2026-06-03T20:58:23.945007Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-03T20:58:23.945012Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-03T20:58:23.945016Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-03T20:58:23.945019Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-03T20:58:23.945023Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-03T20:58:23.945026Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-03T20:58:23.945030Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-03T20:58:23.945033Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-03T20:58:23.945037Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-03T20:58:23.945683Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-03T20:58:23.945777Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-03T20:58:23.951391Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-03T20:58:23.952129Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-03T20:58:23.952281Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-03T20:58:23.952548Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-03T20:58:23.952707Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.953348Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.953477Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.953591Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.954075Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.954353Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.954449Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.954641Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.956192Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.956459Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-03T20:58:23.956714Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.956791Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.956902Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.956974Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.957083Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.957146Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.957253Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.957326Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.957435Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.957496Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.957704Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.957864Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.958223Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.958294Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.958407Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.958471Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.958586Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.958648Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.958759Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.958826Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.958934Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.959001Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.959131Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.959264Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.959541Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.959865Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.960196Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.960260Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.960366Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.960426Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.960537Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.960601Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.960709Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.960789Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.961700Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.962017Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.962136Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.962254Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.962373Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.962441Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.962549Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.962614Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.962726Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.962789Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.962900Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.962961Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.963220Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.963640Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.963749Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.963816Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.963926Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.963986Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.964095Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.964163Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.964271Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.964336Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.979382Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.979676Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.979797Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.980001Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.980689Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.980849Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.980930Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.981027Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.981097Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.981339Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.982609Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.982811Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.983099Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.983353Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-03T20:58:23.984097Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.984988Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.985747Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.986649Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.988261Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.991802Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-06-03T20:58:23.994142Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-06-03T20:58:23.998166Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-06-03T20:58:24.000066Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-06-03T20:58:24.000795Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-06-03T20:58:24.002911Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-06-03T20:58:24.006376Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-03T20:58:24.069566Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-06-03T20:58:24.119223Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.119956Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.123370Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-03T20:58:24.685364Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.686176Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.689289Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-03T20:58:24.750812Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.751563Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.754493Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-06-03T20:58:24.865956Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.866761Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.869561Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-06-03T20:58:24.898697Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.899395Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.902232Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-06-03T20:58:25.113865Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.114632Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.117552Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-06-03T20:58:25.178585Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.178671Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.179371Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.179671Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.182693Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-06-03T20:58:25.183436Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-06-03T20:58:25.212631Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.213327Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.216024Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-03T20:58:25.245403Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.246135Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.248820Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-03T20:58:25.310235Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.311013Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.313777Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-03T20:58:25.342892Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.343614Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.346350Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-06-03T20:58:25.407542Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.408316Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.410986Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-03T20:58:25.440264Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.441038Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.441591Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.443735Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.445296Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-06-03T20:58:25.446411Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-03T20:58:25.508001Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.508705Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.511438Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-06-03T20:58:25.973696Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.974446Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.977179Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-06-03T20:58:26.006339Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.006956Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.008785Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.009521Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.009758Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-03T20:58:26.012407Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-06-03T20:58:26.041628Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.042213Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.044835Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-06-03T20:58:26.156305Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.156943Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.159959Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-06-03T20:58:26.188953Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.189541Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.192123Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-06-03T20:58:26.205320Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.205899Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.208532Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-06-03T20:58:26.269859Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.270497Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.272912Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-06-03T20:58:26.302256Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.302824Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.305343Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-03T20:58:26.366858Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.367454Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.370120Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-03T20:58:26.732418Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.733016Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.735817Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-06-03T20:58:26.748974Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.749531Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.752099Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-03T20:58:26.765227Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.765739Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.768421Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-06-03T20:58:26.781603Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.782177Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.784785Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-06-03T20:58:26.798068Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.798621Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.801005Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-06-03T20:58:26.830561Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.831134Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.833640Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-03T20:58:26.863008Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.863597Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.866382Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-03T20:58:26.927643Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.928256Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.930910Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-06-03T20:58:26.931854Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.932272Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.934828Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-06-03T20:58:26.964099Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.964163Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.964667Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.964930Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.967541Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-06-03T20:58:26.968699Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-06-03T20:58:26.996818Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.997357Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.000151Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-06-03T20:58:27.061295Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.061869Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.064591Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-06-03T20:58:27.126005Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.126569Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.129993Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-03T20:58:27.191005Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.191570Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.194367Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-06-03T20:58:27.355907Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.356511Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.359303Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-06-03T20:58:27.388610Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.389131Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.391867Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-06-03T20:58:27.421304Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.421800Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.424492Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-03T20:58:27.938356Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.938902Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.941966Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-06-03T20:58:28.003193Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.003718Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.006616Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-06-03T20:58:28.019431Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.019913Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.022414Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-06-03T20:58:28.035613Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.036076Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.038736Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-06-03T20:58:28.051813Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.052269Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.054739Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-03T20:58:28.067993Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.068436Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.070882Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-03T20:58:28.076220Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.076652Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.079200Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-06-03T20:58:28.084240Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.116232Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.148070Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.148489Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.150878Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-03T20:58:28.180276Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.244248Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.244661Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.247341Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-03T20:58:28.308698Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.523098Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.523507Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.526319Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-06-03T20:58:28.531136Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.531518Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.533641Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-06-03T20:58:28.563336Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.563391Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.378796Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.379150Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.381538Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-03T20:58:29.410907Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.775469Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.775827Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.778068Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-03T20:58:29.807655Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.807877Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.807982Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.808224Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.808609Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.811445Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-03T20:58:29.812868Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-03T20:58:29.813755Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-03T20:58:29.840986Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.841041Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.841060Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.841235Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.841838Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.844310Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-03T20:58:29.845331Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-03T20:58:29.874888Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.874945Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.875101Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.877167Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-03T20:58:29.906973Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:34.530193Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-03T20:58:42.833198Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-03T20:58:42.833198Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] 
[2026-06-03T20:58:42.833198Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-03T20:58:42.833245Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] 
[2026-06-03T20:58:42.833252Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-03T20:58:42.833259Z] [nf-4f778f5c4109dedc322c5b22fb115619-8b103-h7mfc] [604_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec