File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/7bd2afe7d8805cc25a22dfff4b1c59/.command.err
Size
62.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_2;chr19_15162349-15162662.bed)
Attempt

Content

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[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXhJgKAE/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXhJgKAE/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXhJgKAE/chr19_15162349-15162662.bed.gz.tbi
[2026-06-03T20:58:21.432327Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-03T20:58:21.443274Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-03T20:58:21.443302Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-03T20:58:21.443308Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-03T20:58:21.443313Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXhJgKAE'
[2026-06-03T20:58:21.443318Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-03T20:58:21.443323Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-03T20:58:21.443327Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-03T20:58:21.443332Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-03T20:58:21.443337Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-03T20:58:21.443341Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-03T20:58:21.443345Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-03T20:58:21.443349Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-03T20:58:21.443354Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-03T20:58:21.444310Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-03T20:58:21.444424Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-03T20:58:21.450139Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-03T20:58:21.450753Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-03T20:58:21.450942Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-03T20:58:21.451298Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-03T20:58:21.451589Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.452001Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.452096Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.452168Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.452284Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.452351Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.452472Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.452535Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.452678Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.452993Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.453117Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.453330Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.453421Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.454085Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.454479Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.454689Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.455534Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.456248Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.456600Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-03T20:58:21.456913Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.457276Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.457518Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.457661Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.457736Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.457852Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.457918Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.458034Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.458101Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.458210Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.458276Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.458383Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.458453Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.458713Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.459019Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.459129Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.459192Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.459299Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.459365Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.459481Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.459544Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.459653Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.459714Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.459828Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.459924Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.460882Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.461235Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.461362Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.461483Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.461617Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.461686Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.461798Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.461861Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.461988Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.462055Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.462167Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.462323Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.462864Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.462928Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.463037Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.463101Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.463213Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.463277Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.463389Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.463481Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.463588Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.463659Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.477730Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.478201Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.478270Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.478427Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.478504Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.478704Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.478869Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.479036Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.480049Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T20:58:21.480227Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.480288Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-03T20:58:21.481075Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.481613Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.482433Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.483479Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.485311Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.485710Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-03T20:58:21.486471Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.487376Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.490575Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-06-03T20:58:21.493162Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-03T20:58:21.496591Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-06-03T20:58:21.498684Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.500293Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-03T20:58:21.500611Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-06-03T20:58:21.502904Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-06-03T20:58:21.505410Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-03T20:58:21.565793Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.565856Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.566450Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.566834Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.570517Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-03T20:58:21.571674Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-06-03T20:58:21.599178Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.599887Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.602352Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-06-03T20:58:22.265185Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.266024Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.268953Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-06-03T20:58:22.298069Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.298813Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.301532Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-06-03T20:58:22.302324Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.302893Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.305527Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-06-03T20:58:22.467210Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.467974Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.471075Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-06-03T20:58:22.500246Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.500993Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.503634Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-06-03T20:58:22.532862Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.533568Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.536195Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-03T20:58:22.565525Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.566262Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.569079Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-06-03T20:58:22.680491Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.680572Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.681296Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.681712Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.685050Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-06-03T20:58:22.712100Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-03T20:58:22.714814Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.715507Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.718273Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-06-03T20:58:22.779627Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.780360Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.783676Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-06-03T20:58:22.994958Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.995696Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.998619Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-06-03T20:58:23.210137Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.210846Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.214175Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-06-03T20:58:23.275123Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.275788Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.278748Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-03T20:58:23.440117Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.440815Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.443868Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-03T20:58:23.472694Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.473350Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.476342Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-03T20:58:23.587943Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.588025Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.588673Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.588946Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.592284Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-06-03T20:58:23.593585Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-06-03T20:58:23.703766Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.704446Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.707777Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-06-03T20:58:23.736286Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.736888Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.739654Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-06-03T20:58:23.851057Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.851738Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.854398Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-06-03T20:58:23.883723Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.884287Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.886929Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-06-03T20:58:24.299304Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.299929Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.302951Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-03T20:58:24.332015Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.332588Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.335010Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-03T20:58:24.364484Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.365038Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.367504Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-03T20:58:24.429106Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.429692Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.432739Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-03T20:58:24.461793Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.462337Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.464974Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-06-03T20:58:24.777388Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.777477Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.778081Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.778419Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.781443Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-06-03T20:58:24.782262Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-06-03T20:58:24.810590Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.811212Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.814014Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-06-03T20:58:24.843376Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.844059Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.844347Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.845298Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.847777Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-06-03T20:58:24.848815Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-06-03T20:58:24.878013Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.878542Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.880864Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-06-03T20:58:24.910564Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.911143Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.913471Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-06-03T20:58:24.942997Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.943545Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.946118Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-03T20:58:25.007683Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.008220Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.010842Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-06-03T20:58:25.040311Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.040869Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.043820Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-03T20:58:25.155069Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.155641Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.158239Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-03T20:58:25.187789Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.188336Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.190951Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-06-03T20:58:25.252269Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.252827Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.255490Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-06-03T20:58:25.284715Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.285240Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.287912Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-06-03T20:58:25.349299Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.349862Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.352658Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-06-03T20:58:25.414206Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.414767Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.417460Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-06-03T20:58:25.446637Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.447149Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.449797Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-03T20:58:25.478984Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.479496Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.481916Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-03T20:58:25.483155Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.483598Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.486159Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-03T20:58:25.547698Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.547778Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.548244Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.548527Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.551693Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-06-03T20:58:25.552189Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-03T20:58:25.581290Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.581360Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.795765Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.795842Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.796249Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.796591Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.799712Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-06-03T20:58:25.800520Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-03T20:58:25.828560Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.830027Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.894258Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.894667Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.897074Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-06-03T20:58:25.926510Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.241146Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.241575Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.244079Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-06-03T20:58:26.273401Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.387547Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.387932Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.390407Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-06-03T20:58:26.419843Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.684058Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.684414Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.687009Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-06-03T20:58:26.716264Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.716485Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.716595Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.716811Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.717057Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.721515Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-03T20:58:26.721904Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-03T20:58:26.722576Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-03T20:58:26.748992Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.749051Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.749071Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.749249Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.749528Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.752013Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-03T20:58:26.752724Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-03T20:58:26.782051Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.782114Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.782280Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.784685Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-03T20:58:26.814433Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.128812Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-03T20:58:32.003199Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-03T20:58:32.003199Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] 
[2026-06-03T20:58:32.003199Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-03T20:58:32.003249Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] 
[2026-06-03T20:58:32.003255Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-03T20:58:32.003262Z] [nf-507bd2afe7d8805cc25a22dfff4b1c59-4e2b0-qv5hq] [595_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec