File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/0058bc13184d9fb0ca7d636a21e997/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-17rawk1u because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 21:03:48,235 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 21:03:49,017 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 21:03:49,183 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 21:03:50,086 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-03 21:03:50,264 - cnv_pipe.batch.run_model - INFO - Processing cluster 1197 with 146 probes
2026-06-03 21:03:50,626 - cnv_pipe.batch.run_model.cluster1197 - INFO - Child process started for cluster 1197 with 146 probes
2026-06-03 21:04:32,805 - cnv_pipe.batch.run_model.cluster1197 - INFO - Child process finished cluster 1197. Wrote cluster_1197_samples.csv and cluster_1197_params.csv
2026-06-03 21:04:32,805 - cnv_pipe.batch.run_model - INFO - Cluster 1197 finished in 42.54 seconds. Status: SUCCESS