Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/37/445dbfa56dc8a66e172429b6beba18/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/11/3addc8f0c39978145d931d25ba2ce6/Sig_18_tissue.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/11/3addc8f0c39978145d931d25ba2ce6/Sig_18_tissue.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/37/445dbfa56dc8a66e172429b6beba18/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz.tbi
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-03T20:58:19.156413Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-03T20:58:19.158842Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-03T20:58:19.158853Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-03T20:58:19.158858Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-03T20:58:19.158862Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXLYInfy'
[2026-06-03T20:58:19.158866Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-03T20:58:19.158870Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-03T20:58:19.158874Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-03T20:58:19.158877Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-03T20:58:19.158881Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-03T20:58:19.158885Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-03T20:58:19.158888Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-03T20:58:19.158892Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-03T20:58:19.158895Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-03T20:58:19.159542Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-03T20:58:19.159643Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-03T20:58:19.165409Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-03T20:58:19.166115Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-03T20:58:19.166281Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-03T20:58:19.166652Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-03T20:58:19.166866Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.167352Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.167596Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.167705Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.167805Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.168123Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.168479Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.169882Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.170291Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.170816Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-03T20:58:19.170982Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.171060Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.171172Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.171235Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.171345Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.171409Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.171518Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.171582Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.171744Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.171872Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.172192Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.172418Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.172730Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.172797Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.172906Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.172967Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.173079Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.173143Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.173254Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.173317Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.173424Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.173511Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.173627Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.173841Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.174172Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.174249Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.174357Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.174419Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.174527Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.174604Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.174723Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.174784Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.174930Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.174996Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.175717Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.176071Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.176184Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.176309Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.176423Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.176489Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.176593Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.176669Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.176779Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.176841Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.176955Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.177015Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.177260Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.177685Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.177795Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.177857Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.177966Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.178026Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.178137Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.178198Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.178304Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.178369Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.178479Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.178541Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.194417Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.194853Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.195053Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.195658Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.195779Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.195996Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.196076Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.196286Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.197651Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.198364Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.198488Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.199184Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.199578Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.200010Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.200585Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T20:58:19.201162Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.201565Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-03T20:58:19.203945Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.204851Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-06-03T20:58:19.206686Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.207561Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-06-03T20:58:19.210601Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-03T20:58:19.213598Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-03T20:58:19.215682Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-06-03T20:58:19.218410Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-06-03T20:58:19.221679Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-06-03T20:58:19.222524Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-06-03T20:58:19.282923Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.283585Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.286800Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-03T20:58:19.899339Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.900206Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.902918Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-06-03T20:58:20.014372Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.015187Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.018080Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-06-03T20:58:20.047333Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.048082Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.050789Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-03T20:58:20.080384Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.081173Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.083968Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-06-03T20:58:20.113246Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.114126Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.116954Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-06-03T20:58:20.629225Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.630040Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.632907Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-03T20:58:20.661952Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.662035Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.662793Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.663079Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.666215Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-03T20:58:20.667131Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-03T20:58:20.727525Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.727603Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.728324Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.728675Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.731430Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-03T20:58:20.732495Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-06-03T20:58:20.762056Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.762134Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.762797Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.763015Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.766114Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-03T20:58:20.767053Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-06-03T20:58:20.827519Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.828235Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.830753Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-03T20:58:20.860170Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.860855Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.863383Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-06-03T20:58:20.864402Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.864963Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.867592Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-06-03T20:58:20.880736Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.881356Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.883665Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-03T20:58:20.897071Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.897696Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.899870Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-06-03T20:58:20.913466Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.914112Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.916425Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-06-03T20:58:20.929983Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.930594Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.932926Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-06-03T20:58:20.946704Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.946786Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.947333Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.947608Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.950305Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-03T20:58:20.951386Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-03T20:58:21.012945Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.013626Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.015910Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.016514Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-03T20:58:21.016843Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.018993Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-03T20:58:21.048598Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.049161Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.051499Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-06-03T20:58:21.364197Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.364898Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.367450Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-03T20:58:21.397054Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.397736Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.400329Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-03T20:58:21.562057Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.562780Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.565447Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-06-03T20:58:21.594721Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.595354Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.598127Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-06-03T20:58:21.659421Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.660040Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.662633Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-06-03T20:58:21.724045Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.724136Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.724731Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.725074Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.728065Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-06-03T20:58:21.729037Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-06-03T20:58:21.789512Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.790134Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.792787Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-06-03T20:58:21.822403Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.823034Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-03T20:58:21.825557Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-06-03T20:58:22.137553Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.138167Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.141130Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-03T20:58:22.170371Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.170994Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.173495Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-06-03T20:58:22.203123Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.203708Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.206140Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-03T20:58:22.235541Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.236112Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.238836Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-06-03T20:58:22.551094Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.551712Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.554542Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-06-03T20:58:22.615901Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.616480Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.619435Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-03T20:58:22.648589Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.649160Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.651765Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-06-03T20:58:22.763510Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.764168Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.766834Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-06-03T20:58:22.796160Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.796711Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.799540Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-06-03T20:58:22.911388Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.911986Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.914808Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-06-03T20:58:22.944121Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.944655Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.947248Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-06-03T20:58:22.960513Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.961032Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.963530Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-03T20:58:22.992864Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.993385Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:22.995972Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-03T20:58:23.107568Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.108136Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.110863Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-06-03T20:58:23.140041Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.140577Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.143317Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-06-03T20:58:23.172389Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.172890Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.175418Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-06-03T20:58:23.205137Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.205216Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.205697Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.206231Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.208919Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-03T20:58:23.210100Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-06-03T20:58:23.239592Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.239656Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.240035Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.242510Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-06-03T20:58:23.272234Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.736984Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.737468Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.740137Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-06-03T20:58:23.753502Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.753996Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.756304Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-06-03T20:58:23.769926Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.785740Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.100212Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.100635Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.103088Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-06-03T20:58:24.132565Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.246770Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.247142Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.249224Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-03T20:58:24.278907Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.593395Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.593762Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.596301Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-06-03T20:58:24.625895Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.040671Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.041056Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.043614Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-06-03T20:58:25.073199Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.073438Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.073561Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.073765Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.074742Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.077300Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-03T20:58:25.078599Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-03T20:58:25.079314Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-03T20:58:25.107931Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.107989Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.108009Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.108203Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.108489Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.110629Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-03T20:58:25.111388Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-03T20:58:25.140186Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.140240Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.140399Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.142537Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-03T20:58:25.172271Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.745986Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-03T20:58:38.047245Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-03T20:58:38.047245Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] 
[2026-06-03T20:58:38.047245Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-03T20:58:38.047307Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] 
[2026-06-03T20:58:38.047315Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-03T20:58:38.047322Z] [nf-37445dbfa56dc8a66e172429b6beba18-3f1af-dzkx5] [565_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec