File Info

Filename
output/Logs/Info.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/a4aea50a3969b1fd7931f3aaedc06c/output/Logs/Info.log
Size
3.3 KB
Task
DAQ:BCL_TO_FASTQ:BCLCONVERT (REGRESSION;L007)
Attempt

Content

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2026-06-03T20:48:02Z thread 385 Sample sheet being processed by common lib? Yes
2026-06-03T20:48:02Z thread 385 SampleSheet Settings: 
2026-06-03T20:48:02Z thread 385   OverrideCycles = Y150;I8;I8;Y150
2026-06-03T20:48:02Z thread 385 
2026-06-03T20:48:02Z thread 385 shared-thread-linux-native-asio output is disabled
2026-06-03T20:48:02Z thread 385 bcl-convert Version 4.4.6
2026-06-03T20:48:02Z thread 385 Copyright (c) 2014-2025 Illumina, Inc.
2026-06-03T20:48:02Z thread 385 Command Line: --tiles s_7 --output-directory output --bcl-input-directory rundir --sample-sheet rundir/SampleSheet.csv 
2026-06-03T20:48:02Z thread 385 Conversion Begins.
2026-06-03T20:48:02Z thread 385 Input BCL Information:
2026-06-03T20:48:02Z thread 385     Read Structure: 2026-06-03T20:48:02Z thread 385 Y1502026-06-03T20:48:02Z thread 385 ;2026-06-03T20:48:02Z thread 385 I82026-06-03T20:48:02Z thread 385 ;2026-06-03T20:48:02Z thread 385 I82026-06-03T20:48:02Z thread 385 ;2026-06-03T20:48:02Z thread 385 Y1502026-06-03T20:48:02Z thread 385 
2026-06-03T20:48:02Z thread 385     RunInfo.xml file lists: 8 lanes, 8 tiles
2026-06-03T20:48:02Z thread 385     BCL file format: bcl.gz
2026-06-03T20:48:02Z thread 385     Positions file format: locs
2026-06-03T20:48:02Z thread 385     Filter file format: filter
2026-06-03T20:48:02Z thread 385 Conversion Information:
2026-06-03T20:48:02Z thread 385     Tile filtering: converting 1/8 tiles
2026-06-03T20:48:02Z thread 385     Lane 1 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-03T20:48:02Z thread 385     Lane 2 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-03T20:48:02Z thread 385     Lane 3 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-03T20:48:02Z thread 385     Lane 4 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-03T20:48:02Z thread 385     Lane 5 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-03T20:48:02Z thread 385     Lane 6 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-03T20:48:02Z thread 385     Lane 8 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-03T20:48:02Z thread 385     Sample Count: 4
2026-06-03T20:48:02Z thread 385     Expected number of sample FASTQ files to be created: 8
2026-06-03T20:48:02Z thread 385 # CPU hw threads available: 64
2026-06-03T20:48:02Z thread 385 Parallel Tiles: 4. Threads Per Tile: 16
2026-06-03T20:48:02Z thread 385 SW compressors: 64
2026-06-03T20:48:02Z thread 385 SW decompressors: 32
2026-06-03T20:48:02Z thread 385 SW FASTQ compression level: 1
2026-06-03T20:48:03Z thread 385 Lane 7 Post-run Information:
2026-06-03T20:48:03Z thread 385     Total clusters: 250000
2026-06-03T20:48:03Z thread 385     Total Genomic Reads: 500000
2026-06-03T20:48:03Z thread 385     Total Genomic Input Gigabases 0.08
2026-06-03T20:48:03Z thread 385     Minimum reads for a sample: 124736
2026-06-03T20:48:03Z thread 385     Maximum reads for a sample: 125234
2026-06-03T20:48:03Z thread 385     Average reads per sample: 125000.00
2026-06-03T20:48:03Z thread 385     Undetermined reads: 0
2026-06-03T20:48:03Z thread 385 Conversion Complete.