Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/65/8088d34aae9d8f970ea46949434a4d/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/28/9b07206464e732a00b7bf74852ddd6/HCC1395_BL.recalibrated.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/28/9b07206464e732a00b7bf74852ddd6/HCC1395_BL.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/65/8088d34aae9d8f970ea46949434a4d/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz.tbi
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-03T20:58:23.229962Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-03T20:58:23.235002Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-03T20:58:23.235030Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-03T20:58:23.235037Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-03T20:58:23.235041Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXUqq4M9'
[2026-06-03T20:58:23.235046Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-03T20:58:23.235050Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-03T20:58:23.235054Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-03T20:58:23.235058Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-03T20:58:23.235061Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-03T20:58:23.235065Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-03T20:58:23.235069Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-03T20:58:23.235072Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-03T20:58:23.235076Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-03T20:58:23.235755Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-03T20:58:23.235851Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-03T20:58:23.241585Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-03T20:58:23.242420Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-03T20:58:23.242629Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-03T20:58:23.242837Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-03T20:58:23.243098Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.243401Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.243490Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.243562Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.243680Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.243748Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.243866Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.243933Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.244049Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.244112Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.244428Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.244670Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.244842Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.244977Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.245054Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.245347Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.245527Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.247540Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.247930Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.248198Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-03T20:58:23.248659Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.248741Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.248866Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.248938Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.249053Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.249119Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.249238Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.249307Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.249416Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.249618Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.249974Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.250043Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.250155Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.250257Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.250374Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.250439Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.250550Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.250618Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.250731Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.250794Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.250909Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.250977Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.251087Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.251153Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.251967Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.252342Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.252460Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.252529Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.252707Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.252775Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.252886Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.252947Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.253060Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.253124Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.253233Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.253296Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.253407Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.253502Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.253797Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.254237Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.254359Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.254422Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.254535Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.254597Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.254707Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.254776Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.254886Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.254947Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.270318Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.270813Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.270917Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.271098Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.271173Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.271263Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.271335Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.272961Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.273517Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T20:58:23.273590Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-03T20:58:23.275565Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.276179Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.276479Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.276808Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.277297Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.278162Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.278617Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.280647Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.281320Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-03T20:58:23.281998Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.284996Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-03T20:58:23.289020Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-06-03T20:58:23.292583Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-03T20:58:23.294858Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-06-03T20:58:23.295325Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-03T20:58:23.297738Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-06-03T20:58:23.369071Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-03T20:58:23.398069Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.398174Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.398958Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.399305Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.403649Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-06-03T20:58:23.404598Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-03T20:58:23.464857Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.465706Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.468886Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-06-03T20:58:23.931150Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.932075Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:23.935394Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-06-03T20:58:24.197232Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.198087Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.200976Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-03T20:58:24.230284Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.231120Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.234139Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-06-03T20:58:24.797074Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.797890Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.800608Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-03T20:58:24.829816Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.830620Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.833584Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-03T20:58:25.045291Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.046123Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.048769Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-03T20:58:25.078136Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.078921Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.082002Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-06-03T20:58:25.143285Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.143365Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.143395Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.144126Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.144456Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.144743Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.148243Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-06-03T20:58:25.149502Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-06-03T20:58:25.150462Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-06-03T20:58:25.177750Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.178421Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.181037Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-06-03T20:58:25.195283Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.195932Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.198630Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-06-03T20:58:25.211851Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.212527Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.215010Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-03T20:58:25.244569Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.245274Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.248112Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-06-03T20:58:25.261082Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.261741Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.264232Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-06-03T20:58:25.293670Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.294355Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.297426Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-06-03T20:58:25.408760Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.409485Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.412810Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-06-03T20:58:25.724121Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.724886Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.727672Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-03T20:58:25.756785Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.757393Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.759940Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-03T20:58:25.821485Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.822204Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.825101Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-03T20:58:25.854005Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.854676Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.857674Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-06-03T20:58:25.968700Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.969332Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.972435Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-06-03T20:58:26.001142Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.001767Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.004616Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-06-03T20:58:26.033647Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.034308Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.036764Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-06-03T20:58:26.098617Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.099296Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.102934Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-03T20:58:26.163509Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.164134Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.167445Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-03T20:58:26.228727Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.229377Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.232347Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-03T20:58:26.293483Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.294182Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.296884Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-03T20:58:26.326423Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.327050Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.329942Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-06-03T20:58:26.391035Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.391683Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.394508Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-06-03T20:58:26.423509Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.424076Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.427114Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-06-03T20:58:26.638782Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.639416Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.642584Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-06-03T20:58:26.671379Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.671963Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.674812Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-06-03T20:58:26.785921Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.786482Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.789319Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-06-03T20:58:26.818338Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.818868Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.822016Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-03T20:58:26.983111Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.983710Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.986354Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-06-03T20:58:27.015490Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.016038Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.018571Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-06-03T20:58:27.080167Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.080712Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.083860Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-06-03T20:58:27.112623Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.113187Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.115830Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-03T20:58:27.277592Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.278167Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.281228Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-06-03T20:58:27.392804Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.393383Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.396172Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-06-03T20:58:27.457393Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.457457Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.457917Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.458348Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.461363Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-06-03T20:58:27.462494Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-03T20:58:27.522487Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.522968Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.525898Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-06-03T20:58:27.526623Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.527019Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.529284Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-06-03T20:58:27.558890Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.559355Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.562061Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-03T20:58:27.623498Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.624011Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.627009Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-06-03T20:58:27.838629Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.839204Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.841930Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-06-03T20:58:27.903295Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.903790Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.906654Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-06-03T20:58:27.967807Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.082086Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.082613Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.085735Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-06-03T20:58:28.114753Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.118278Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.118635Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.121287Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-03T20:58:28.150362Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.264513Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.264578Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.265268Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.265664Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.266076Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.269286Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.269786Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-06-03T20:58:28.270209Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-03T20:58:28.272178Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-06-03T20:58:28.301348Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.301401Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.301432Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.415443Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.415864Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.418522Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-06-03T20:58:28.447585Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.563319Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.563719Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.566822Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-06-03T20:58:29.595651Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.595906Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.596020Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.596591Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.597005Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.601155Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-03T20:58:29.601390Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-03T20:58:29.602064Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-03T20:58:29.629213Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.629259Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.629281Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.629444Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.629664Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.632159Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-03T20:58:29.633305Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-03T20:58:29.661523Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.661596Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.661793Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.663999Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-03T20:58:29.694803Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:33.816499Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-03T20:58:42.123286Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-03T20:58:42.123286Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] 
[2026-06-03T20:58:42.123286Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-03T20:58:42.123343Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] 
[2026-06-03T20:58:42.123350Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-03T20:58:42.123356Z] [nf-658088d34aae9d8f970ea46949434a4d-8c429-rqwbt] [609_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec