.command.log - Workdir - DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr4_22420786-22421189.bed)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/2e8e7362a0be0bdfdde3a1fe22a477/.command.log
Size: 87.4 KB
Task: DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr4_22420786-22421189.bed)
Attempt
Content

  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr4_22420786-22421189.bed.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/2e8e7362a0be0bdfdde3a1fe22a477/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr4_22420786-22421189.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/2e8e7362a0be0bdfdde3a1fe22a477/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/f2b19ea24476199183849c3fbd492f/Sig_18_Blood.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/f2b19ea24476199183849c3fbd492f/Sig_18_Blood.recalibrated.bam
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-03T20:58:25.816485Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-03T20:58:25.825620Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-03T20:58:25.825650Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-03T20:58:25.825655Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-03T20:58:25.825660Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXrHUbY9'
[2026-06-03T20:58:25.825663Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-03T20:58:25.825670Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-03T20:58:25.825674Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-03T20:58:25.825678Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-03T20:58:25.825681Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-03T20:58:25.825685Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-03T20:58:25.825688Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-03T20:58:25.825692Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-03T20:58:25.825696Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-03T20:58:25.826630Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-03T20:58:25.826760Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-03T20:58:25.832733Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-03T20:58:25.833414Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-03T20:58:25.833629Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-03T20:58:25.834035Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-03T20:58:25.834302Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.834741Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.834834Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.834907Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.835028Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.835095Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.835258Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.835327Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.835793Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.835939Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.836036Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.836156Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.836242Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.836714Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.837104Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.838659Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.839041Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-03T20:58:25.839118Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.839461Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.839706Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.840013Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.840079Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.840190Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.840257Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.840366Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.840428Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.840541Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.840605Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.840718Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.840785Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.840894Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.840959Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.841205Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.841539Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.841661Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.841730Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.841838Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.841902Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.842020Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.842079Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.842194Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.842279Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.842391Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.842454Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.842574Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.842699Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.843152Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.843273Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.843387Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.843455Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.843561Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.843625Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.843732Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.843794Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.843902Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.843962Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.844076Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.844354Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.844718Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.844783Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.844891Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.844951Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.845062Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.845152Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.845272Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.845358Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.845478Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.845541Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.845652Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.845769Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.846004Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.846670Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.847227Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.847295Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.848699Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.849124Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.849254Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.849321Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.849457Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.849528Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.849641Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.849706Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.849819Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.849883Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.849991Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.850058Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.850227Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.850825Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.850939Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.851002Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.851114Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.851178Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.851285Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.851347Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.851458Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.851519Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.866597Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.867331Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.867477Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.867540Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.867911Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.868818Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.868903Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.869025Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.869117Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.869693Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.869858Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.870166Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.870449Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.871030Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-03T20:58:25.871339Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.872337Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.873338Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.874698Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.876418Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-06-03T20:58:25.878675Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0005] Task initiated on local node
[2026-06-03T20:58:25.879311Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.881901Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0003] Task initiated on local node
[2026-06-03T20:58:25.887242Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0012] Task initiated on local node
[2026-06-03T20:58:25.889352Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0007] Task initiated on local node
[2026-06-03T20:58:25.890204Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0010] Task initiated on local node
[2026-06-03T20:58:25.892485Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0002] Task initiated on local node
[2026-06-03T20:58:25.895500Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-06-03T20:58:26.157248Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.158240Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.161288Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-06-03T20:58:26.423211Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.424269Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.427450Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0002] Task initiated on local node
[2026-06-03T20:58:26.488572Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.489580Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.492572Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0008] Task initiated on local node
[2026-06-03T20:58:26.754348Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.755492Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.758307Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-06-03T20:58:26.787385Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.788309Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.790920Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0013] Task initiated on local node
[2026-06-03T20:58:26.852442Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.853425Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.856025Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0006] Task initiated on local node
[2026-06-03T20:58:26.869573Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.870484Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.872967Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0007] Task initiated on local node
[2026-06-03T20:58:26.984764Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.985765Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.988526Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-06-03T20:58:27.049999Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.051118Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.053862Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-06-03T20:58:27.058797Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.059793Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.062329Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0005] Task initiated on local node
[2026-06-03T20:58:27.091673Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.092586Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.095175Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-06-03T20:58:27.124563Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.124647Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.125576Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.125853Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.128792Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0010] Task initiated on local node
[2026-06-03T20:58:27.129946Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-06-03T20:58:27.157781Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.157858Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.158727Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.159063Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.161715Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0002] Task initiated on local node
[2026-06-03T20:58:27.162830Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-06-03T20:58:27.191204Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.192134Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.194738Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0005] Task initiated on local node
[2026-06-03T20:58:27.224414Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.225298Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.227974Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-06-03T20:58:27.841412Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.842428Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.845291Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0015] Task initiated on local node
[2026-06-03T20:58:27.874677Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.875670Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.878382Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0000] Task initiated on local node
[2026-06-03T20:58:27.883534Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.884336Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.886954Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0007] Task initiated on local node
[2026-06-03T20:58:27.916144Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.916992Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.919421Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0004] Task initiated on local node
[2026-06-03T20:58:28.081462Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.082755Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.083023Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.085520Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0005] Task initiated on local node
[2026-06-03T20:58:28.085673Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.088369Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0010] Task initiated on local node
[2026-06-03T20:58:28.117837Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.118682Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.121413Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0004] Task initiated on local node
[2026-06-03T20:58:28.233110Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.233202Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.234108Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.234453Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.237659Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-06-03T20:58:28.237980Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0012] Task initiated on local node
[2026-06-03T20:58:28.298702Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.298791Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.299629Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.299979Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.303578Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-06-03T20:58:28.304620Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0014] Task initiated on local node
[2026-06-03T20:58:28.364781Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.364864Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.365786Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.366090Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.369258Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_003_chr4_0000] Task initiated on local node
[2026-06-03T20:58:28.370167Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-06-03T20:58:28.430508Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.431359Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.434132Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-06-03T20:58:28.495503Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.496386Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.499018Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0002] Task initiated on local node
[2026-06-03T20:58:28.528405Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.529221Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.532175Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0009] Task initiated on local node
[2026-06-03T20:58:28.561262Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.562107Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.564719Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0003] Task initiated on local node
[2026-06-03T20:58:28.594091Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.594902Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.597449Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0008] Task initiated on local node
[2026-06-03T20:58:28.611013Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.611746Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.614364Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-06-03T20:58:28.627524Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.628179Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.630641Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0013] Task initiated on local node
[2026-06-03T20:58:28.644040Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.644789Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.647629Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0006] Task initiated on local node
[2026-06-03T20:58:28.660533Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.661281Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.663843Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-06-03T20:58:28.677095Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.677859Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.680243Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0008] Task initiated on local node
[2026-06-03T20:58:28.792118Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.792943Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.795958Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0000] Task initiated on local node
[2026-06-03T20:58:28.824988Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.825833Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.828531Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0001] Task initiated on local node
[2026-06-03T20:58:28.889853Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.890640Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.893350Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-06-03T20:58:28.922534Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.923286Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.925735Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0004] Task initiated on local node
[2026-06-03T20:58:28.955186Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.955898Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.958468Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0010] Task initiated on local node
[2026-06-03T20:58:28.987960Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.988691Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.991276Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-06-03T20:58:29.153006Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.153845Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.156548Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-06-03T20:58:29.185786Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.186511Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.189299Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-06-03T20:58:29.350944Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.351039Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.351753Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.352102Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.355425Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0015] Task initiated on local node
[2026-06-03T20:58:29.356515Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0009] Task initiated on local node
[2026-06-03T20:58:29.356738Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.357325Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.359891Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0011] Task initiated on local node
[2026-06-03T20:58:29.389154Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.389850Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.392263Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0004] Task initiated on local node
[2026-06-03T20:58:29.421732Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.422439Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.424806Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0007] Task initiated on local node
[2026-06-03T20:58:29.454314Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.455002Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.457622Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0001] Task initiated on local node
[2026-06-03T20:58:29.519097Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.519814Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.522195Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-06-03T20:58:29.551677Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.552363Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.554710Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-06-03T20:58:29.666482Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.667211Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.670277Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-06-03T20:58:29.781569Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.781657Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.782307Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.782621Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.785813Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-06-03T20:58:29.786720Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0000] Task initiated on local node
[2026-06-03T20:58:29.814903Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.815626Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.818306Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-06-03T20:58:29.819195Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.819725Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.821990Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0009] Task initiated on local node
[2026-06-03T20:58:29.851553Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.852227Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.854910Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0012] Task initiated on local node
[2026-06-03T20:58:30.016726Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.017480Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.020971Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0001] Task initiated on local node
[2026-06-03T20:58:30.049683Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.050364Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.053182Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0006] Task initiated on local node
[2026-06-03T20:58:30.265042Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.265868Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.269003Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-06-03T20:58:30.298225Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.298874Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.301528Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0011] Task initiated on local node
[2026-06-03T20:58:30.463214Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.463930Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.466813Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0003] Task initiated on local node
[2026-06-03T20:58:30.678933Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.679028Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.679657Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.680006Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.683063Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-06-03T20:58:30.683740Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0011] Task initiated on local node
[2026-06-03T20:58:30.712221Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.712307Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.712871Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.713166Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.715899Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-06-03T20:58:30.717089Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-06-03T20:58:30.745207Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.745841Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.748493Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0008] Task initiated on local node
[2026-06-03T20:58:30.777882Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.778481Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.781396Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0014] Task initiated on local node
[2026-06-03T20:58:30.842501Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.843049Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.845746Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0000] Task initiated on local node
[2026-06-03T20:58:30.874969Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.875614Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.878342Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0001] Task initiated on local node
[2026-06-03T20:58:30.907557Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.908123Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.910584Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0014] Task initiated on local node
[2026-06-03T20:58:30.940025Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.940595Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.943219Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0013] Task initiated on local node
[2026-06-03T20:58:31.004631Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.005263Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.008134Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0013] Task initiated on local node
[2026-06-03T20:58:31.021155Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.021737Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.024160Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-06-03T20:58:31.037546Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.038085Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.040760Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-06-03T20:58:31.054149Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.054666Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.057092Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0009] Task initiated on local node
[2026-06-03T20:58:31.070413Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.086331Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.250617Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.251135Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.253744Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0012] Task initiated on local node
[2026-06-03T20:58:31.283047Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.397226Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.397749Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.400325Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0006] Task initiated on local node
[2026-06-03T20:58:31.429686Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.544123Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.544591Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.547188Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0014] Task initiated on local node
[2026-06-03T20:58:31.560388Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.560863Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.563465Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-06-03T20:58:31.576807Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.592705Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.706717Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.707164Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.709378Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0011] Task initiated on local node
[2026-06-03T20:58:31.738989Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:32.204112Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:32.204578Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:32.207181Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0003] Task initiated on local node
[2026-06-03T20:58:32.236566Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:32.236853Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:32.236978Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:32.237252Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:32.237612Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-03T20:58:32.241682Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-03T20:58:32.242955Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-03T20:58:32.243932Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-03T20:58:32.270277Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:32.270346Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:32.270368Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:32.270563Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:32.270885Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:32.273365Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-03T20:58:32.273800Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-03T20:58:32.302695Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:32.302767Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:32.302943Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T20:58:32.305401Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-03T20:58:32.334994Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:36.458875Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-03T20:58:44.714416Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-03T20:58:44.714416Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] 
[2026-06-03T20:58:44.714416Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-03T20:58:44.714471Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] 
[2026-06-03T20:58:44.714478Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-03T20:58:44.714485Z] [nf-d12e8e7362a0be0bdfdde3a1fe22a477-4a93b-r592z] [554_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec