Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr10_74133927-74134264.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/1a61cb0673d6aed875d3e8d56c4566/HCC1395_tumor.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/5bdeaa289814307bee55d93c27b291/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/1a61cb0673d6aed875d3e8d56c4566/HCC1395_tumor.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr10_74133927-74134264.bed.gz.tbi
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/5bdeaa289814307bee55d93c27b291/.command.run
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-03T20:58:14.057486Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-03T20:58:14.086522Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-03T20:58:14.086549Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-03T20:58:14.086556Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-03T20:58:14.086562Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXAsgdnf'
[2026-06-03T20:58:14.086567Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-03T20:58:14.086574Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-03T20:58:14.086580Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-03T20:58:14.086585Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] [RunParameters] memMb: 1523801
[2026-06-03T20:58:14.086589Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-03T20:58:14.086597Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-03T20:58:14.086602Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-03T20:58:14.086608Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-03T20:58:14.086614Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-03T20:58:14.087037Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-03T20:58:14.087132Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-03T20:58:14.094574Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-03T20:58:14.095241Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-03T20:58:14.095402Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-03T20:58:14.095549Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-03T20:58:14.095774Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.096585Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.096699Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.096793Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.097098Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.097334Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.097419Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T20:58:14.097646Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.097919Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.098369Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.098501Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.098699Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.098842Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.100794Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-03T20:58:14.100899Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.101018Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.101192Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.101282Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.101420Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.101495Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.101636Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.101809Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.102019Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.102351Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.102495Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.102572Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.102730Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.102810Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.102946Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.103033Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.103169Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.103289Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.103565Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.103977Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.104213Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.104630Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.104773Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.104851Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.104988Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.105067Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.105249Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.105335Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.105513Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.105600Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.105880Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.106316Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.106457Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.106536Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.106739Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.106822Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.106959Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.107039Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.107174Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.107251Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.107524Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.108015Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.108154Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.108237Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.108367Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.108448Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.108619Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.108698Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.108839Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.108917Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.109261Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.109770Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.109909Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.109986Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.110123Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.110207Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.110361Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.110440Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.110573Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.110650Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.130186Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.130360Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.130507Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.130735Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:14.131020Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.131936Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.132083Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:14.132454Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:14.132675Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.133030Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:14.133319Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.133668Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:14.134210Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:14.134429Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.134882Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:14.135265Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.135448Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:14.136153Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:14.136303Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-03T20:58:14.141397Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node
[2026-06-03T20:58:14.146736Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node
[2026-06-03T20:58:14.147429Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node
[2026-06-03T20:58:14.151139Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0004] Task initiated on local node
[2026-06-03T20:58:14.154876Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0009] Task initiated on local node
[2026-06-03T20:58:14.156296Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-03T20:58:14.157870Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-03T20:58:14.263145Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:14.264144Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:14.268144Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node
[2026-06-03T20:58:14.729220Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:14.730226Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:14.733265Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node
[2026-06-03T20:58:15.095757Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-03T20:58:15.144866Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:15.144926Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:15.145876Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:15.146173Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:15.149055Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node
[2026-06-03T20:58:15.149927Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-03T20:58:15.178072Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:15.178821Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:15.181301Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0001] Task initiated on local node
[2026-06-03T20:58:15.543203Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:15.544175Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:15.547207Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0006] Task initiated on local node
[2026-06-03T20:58:15.576234Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:15.577174Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:15.579960Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-03T20:58:15.584809Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:15.585559Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:15.588208Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node
[2026-06-03T20:58:15.617314Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:15.617392Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:15.618233Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:15.618436Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:15.621251Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0009] Task initiated on local node
[2026-06-03T20:58:15.622241Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node
[2026-06-03T20:58:15.634537Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:15.635357Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:15.638156Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-03T20:58:15.651345Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:15.652183Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:15.654863Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node
[2026-06-03T20:58:15.683848Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:15.684573Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:15.687163Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0011] Task initiated on local node
[2026-06-03T20:58:15.700151Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:15.700864Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:15.703187Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-03T20:58:15.732483Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:15.733179Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:15.736070Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node
[2026-06-03T20:58:16.147687Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:16.148577Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:16.151435Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node
[2026-06-03T20:58:16.262504Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:16.263206Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:16.265516Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-03T20:58:16.294865Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:16.295519Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:16.297629Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-03T20:58:16.327150Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:16.327793Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:16.330228Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-03T20:58:16.331212Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:16.331873Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:16.334512Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0004] Task initiated on local node
[2026-06-03T20:58:16.363643Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:16.364368Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:16.366655Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-03T20:58:16.396106Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:16.396159Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:16.396852Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:16.397066Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:16.399789Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node
[2026-06-03T20:58:16.400806Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node
[2026-06-03T20:58:16.404774Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:16.405392Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:16.408145Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0000] Task initiated on local node
[2026-06-03T20:58:16.437253Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:16.437931Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:16.440295Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-03T20:58:16.469654Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:16.470328Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:16.472763Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-03T20:58:16.534087Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:16.534767Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:16.537124Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0010] Task initiated on local node
[2026-06-03T20:58:16.748759Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:16.749426Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:16.752013Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0005] Task initiated on local node
[2026-06-03T20:58:16.863235Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:16.863294Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:16.863925Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:16.864468Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:16.868058Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node
[2026-06-03T20:58:16.869225Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node
[2026-06-03T20:58:16.896510Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:16.897081Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:16.899336Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0008] Task initiated on local node
[2026-06-03T20:58:17.261225Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:17.261953Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:17.264308Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node
[2026-06-03T20:58:17.293528Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:17.294110Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:17.296451Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-03T20:58:17.357786Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:17.358356Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:17.360652Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0011] Task initiated on local node
[2026-06-03T20:58:17.389911Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:17.390474Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:17.392605Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-03T20:58:17.422060Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:17.422613Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:17.424775Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0001] Task initiated on local node
[2026-06-03T20:58:17.454195Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:17.454752Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:17.457027Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-03T20:58:17.668708Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:17.669384Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:17.672193Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-03T20:58:17.733334Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:17.733954Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:17.736487Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node
[2026-06-03T20:58:17.847818Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:17.848418Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:17.851316Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0003] Task initiated on local node
[2026-06-03T20:58:17.962376Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:17.962940Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:17.965285Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node
[2026-06-03T20:58:17.994581Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:17.995103Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:17.997663Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-03T20:58:18.026850Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.026907Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.027453Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.027707Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.030725Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0010] Task initiated on local node
[2026-06-03T20:58:18.031441Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-03T20:58:18.060469Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.060533Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.060563Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.061145Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.061382Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.061775Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.065493Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node
[2026-06-03T20:58:18.065787Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0008] Task initiated on local node
[2026-06-03T20:58:18.091655Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node
[2026-06-03T20:58:18.094217Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.094265Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.094289Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.094792Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.095049Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.095441Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.099147Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node
[2026-06-03T20:58:18.100283Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node
[2026-06-03T20:58:18.102741Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0007] Task initiated on local node
[2026-06-03T20:58:18.131750Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.131797Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.132291Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.132572Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.135595Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_009_chr10_0000] Task initiated on local node
[2026-06-03T20:58:18.182086Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-03T20:58:18.197283Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.197342Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.197835Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.198035Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.201204Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-03T20:58:18.202581Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0002] Task initiated on local node
[2026-06-03T20:58:18.261945Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.262464Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.264819Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node
[2026-06-03T20:58:18.294101Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.294544Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.297128Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0006] Task initiated on local node
[2026-06-03T20:58:18.326287Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.326781Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.329266Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-03T20:58:18.540801Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.541334Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.543827Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0000] Task initiated on local node
[2026-06-03T20:58:18.572970Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.636733Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.637115Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.639390Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0003] Task initiated on local node
[2026-06-03T20:58:18.668704Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.982756Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.983120Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.985278Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-03T20:58:19.014659Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.046334Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.046701Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.048711Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0007] Task initiated on local node
[2026-06-03T20:58:19.078248Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.141954Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.142309Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.144444Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0005] Task initiated on local node
[2026-06-03T20:58:19.173874Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.173911Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.174283Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.176282Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0002] Task initiated on local node
[2026-06-03T20:58:19.205852Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.670186Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.670628Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.672923Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-03T20:58:19.702228Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.702269Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.702635Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.704682Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node
[2026-06-03T20:58:19.734223Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.734456Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.734559Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.734770Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.735012Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.740195Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-03T20:58:19.740422Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-03T20:58:19.741293Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-03T20:58:19.767176Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.767222Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.767246Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.767461Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.767664Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.769996Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-03T20:58:19.770753Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-03T20:58:19.799440Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.799477Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.799633Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.801515Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-03T20:58:19.831205Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.701229Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-03T20:58:32.974234Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-03T20:58:32.974234Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] 
[2026-06-03T20:58:32.974234Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-03T20:58:32.974279Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] 
[2026-06-03T20:58:32.974291Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-03T20:58:32.974299Z] [nf-cb5bdeaa289814307bee55d93c27b291-1484a-hwf94] [775_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec