cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i HCC1395_BL.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz HCC1395_BL.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119802828, elapsed 0.0s, est remaining 0.7s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 1657
progress 10% @chr2:19993111, elapsed 0.1s, est remaining 0.6s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 11688
progress 15% @chr2:189054159, elapsed 0.1s, est remaining 0.6s, peak mem 165MB, user 0.0s, sys 0.0s, output queue size 3500
progress 20% @chr3:97871842, elapsed 0.1s, est remaining 0.6s, peak mem 165MB, user 0.0s, sys 0.0s, output queue size 13965
progress 25% @chr4:88405554, elapsed 0.2s, est remaining 0.5s, peak mem 166MB, user 0.0s, sys 0.0s, output queue size 24232
progress 30% @chr5:147415709, elapsed 0.2s, est remaining 0.5s, peak mem 174MB, user 0.0s, sys 0.0s, output queue size 34282
progress 35% @chr6:127137390, elapsed 0.2s, est remaining 0.5s, peak mem 174MB, user 0.0s, sys 0.0s, output queue size 44218
progress 40% @chr7:128801186, elapsed 0.3s, est remaining 0.4s, peak mem 174MB, user 0.0s, sys 0.0s, output queue size 53706
progress 45% @chr9:2007196, elapsed 0.3s, est remaining 0.4s, peak mem 292MB, user 0.0s, sys 0.0s, output queue size 63080
progress 50% @chr10:32293592, elapsed 0.3s, est remaining 0.3s, peak mem 307MB, user 0.0s, sys 0.0s, output queue size 901
progress 55% @chr11:48139486, elapsed 0.4s, est remaining 0.3s, peak mem 307MB, user 0.0s, sys 0.0s, output queue size 11368
progress 60% @chr12:21894032, elapsed 0.4s, est remaining 0.3s, peak mem 307MB, user 0.0s, sys 0.0s, output queue size 20915
progress 65% @chr13:49278350, elapsed 0.4s, est remaining 0.2s, peak mem 307MB, user 0.0s, sys 0.0s, output queue size 31969
progress 70% @chr15:42566607, elapsed 0.5s, est remaining 0.2s, peak mem 307MB, user 0.0s, sys 0.0s, output queue size 42002
progress 75% @chr16:30892840, elapsed 0.5s, est remaining 0.2s, peak mem 307MB, user 0.0s, sys 0.0s, output queue size 51568
progress 80% @chr17:42466429, elapsed 0.5s, est remaining 0.1s, peak mem 307MB, user 0.0s, sys 0.1s, output queue size 62261
progress 85% @chr19:5661518, elapsed 0.6s, est remaining 0.1s, peak mem 334MB, user 0.0s, sys 0.1s, output queue size 72666
progress 90% @chr19:55642509, elapsed 0.6s, est remaining 0.1s, peak mem 334MB, user 0.0s, sys 0.1s, output queue size 82170
progress 95% @chr22:36923717, elapsed 0.9s, est remaining 0.0s, peak mem 2539MB, user 6.2s, sys 1.7s, output queue size 2843
progress 100% @chrY:25043946, elapsed 1.0s, est remaining 0.0s, peak mem 2539MB, user 6.3s, sys 1.7s, output queue size 9583
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
input file size: 51395361
reads: 1001089
contig: 201779 intervals 37922265 bases
advance: 208647 calls 1.844 user 0.084 sys 2.122 real
done: 1 calls 0.276 user 0.068 sys 0.345 real
execute: 1 calls 0.003 user 0.011 sys 0.977 real
fetch_reads: 208647 calls 0.067 user 0.000 sys 0.143 real
fetch_ref: 2042 calls 0.005 user 0.012 sys 0.028 real
fetch_vcf: 2042 calls 0.912 user 0.016 sys 0.951 real
idle: 92 calls 0.003 user 0.001 sys 31.528 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 2207 calls 4.052 user 1.520 sys 6.238 real
overall: 2663051264 mem 9.647 user 13.308 sys 2.340 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory