Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/32b1e3d114be61c2d0add3ad0b0f54/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/32b1e3d114be61c2d0add3ad0b0f54/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/f2b19ea24476199183849c3fbd492f/Sig_18_Blood.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/f2b19ea24476199183849c3fbd492f/Sig_18_Blood.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz.tbi
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-03T20:58:24.987736Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-03T20:58:24.988382Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-03T20:58:24.988397Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-03T20:58:24.988402Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-03T20:58:24.988408Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXreIav4'
[2026-06-03T20:58:24.988414Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-03T20:58:24.988420Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-03T20:58:24.988426Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-03T20:58:24.988430Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] [RunParameters] memMb: 1523801
[2026-06-03T20:58:24.988435Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-03T20:58:24.988441Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-03T20:58:24.988445Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-03T20:58:24.988450Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-03T20:58:24.988456Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-03T20:58:24.988822Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-03T20:58:24.988917Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-03T20:58:24.995921Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-03T20:58:24.996621Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-03T20:58:24.996680Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-03T20:58:24.996960Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-03T20:58:24.997142Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.997463Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.997573Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.997662Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.997811Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.997894Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.998131Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.998437Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.998513Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.998767Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.999222Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.999535Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.999692Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.999906Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.000035Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.001634Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.002057Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-03T20:58:25.002109Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.002287Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.002369Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.002612Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.002710Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.002866Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.002955Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.003441Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.003542Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.003691Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.003771Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.003929Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.004015Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.004154Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.004237Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.004374Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.004532Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.004787Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.005417Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.005717Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.005800Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.005942Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.006018Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.006155Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.006230Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.006369Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.006445Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.007452Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.007763Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.008383Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.008588Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.009163Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.009248Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.009389Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.009495Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.009670Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.009748Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.009886Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.009966Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.010154Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.010695Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.010832Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.010912Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.011052Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.011130Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.011266Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.011347Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.011478Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.011564Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.011712Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.011847Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.030709Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.030871Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.030970Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.031224Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.031384Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.031499Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.031652Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.032389Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.033815Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.033968Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.034391Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.034612Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T20:58:25.035004Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.035446Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.035663Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-03T20:58:25.036313Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.037143Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.037902Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.038483Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.043857Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-03T20:58:25.048086Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-06-03T20:58:25.049091Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-06-03T20:58:25.053390Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-03T20:58:25.055410Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-06-03T20:58:25.057668Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-06-03T20:58:25.060577Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-06-03T20:58:25.120393Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.121146Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.125132Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-03T20:58:25.786072Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.786924Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.789594Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-06-03T20:58:26.000807Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.000856Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.001567Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.001781Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.004695Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-06-03T20:58:26.005974Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-03T20:58:26.065769Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.066451Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.069084Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-03T20:58:26.098231Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.099002Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.101661Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-06-03T20:58:26.763602Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.764376Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.767233Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-03T20:58:26.978683Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.979560Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.982201Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-03T20:58:27.008395Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-06-03T20:58:27.011279Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.011341Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.011373Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.012094Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.012304Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.012806Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.015662Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-06-03T20:58:27.017162Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-03T20:58:27.017759Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-06-03T20:58:27.044693Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.045370Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.048186Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-06-03T20:58:27.077193Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.077923Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.080427Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-06-03T20:58:27.109638Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.110364Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.112775Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-06-03T20:58:27.113877Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.114578Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.117283Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-06-03T20:58:27.146308Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.146938Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.149713Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-06-03T20:58:27.310881Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.311578Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.314468Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-06-03T20:58:27.375528Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.376202Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.378807Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-06-03T20:58:27.407803Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.408438Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.411306Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-03T20:58:27.522482Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.523141Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.525518Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-06-03T20:58:27.554736Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.554787Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.555366Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.555596Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.558164Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-03T20:58:27.559161Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-03T20:58:27.587490Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.588105Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.590932Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-06-03T20:58:27.619990Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.620607Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.622817Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-03T20:58:27.652163Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.652730Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.654726Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-06-03T20:58:27.684283Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.684850Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.687256Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-06-03T20:58:27.898697Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.899267Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.901424Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-06-03T20:58:27.930843Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.931414Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.934278Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-03T20:58:27.963249Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.963908Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.966016Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-06-03T20:58:27.995495Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.996061Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.998546Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-06-03T20:58:28.560443Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.561135Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.564174Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-03T20:58:28.725322Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.725926Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.728565Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-03T20:58:28.757648Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.758233Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.761050Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-06-03T20:58:28.761848Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.762368Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.764874Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-03T20:58:28.794088Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.794672Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.797069Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-06-03T20:58:28.826361Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.826933Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.829239Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-06-03T20:58:28.858615Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.859188Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.861505Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-03T20:58:28.890934Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.891500Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.894029Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-06-03T20:58:28.907070Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.907570Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.910266Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-06-03T20:58:28.923172Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.923702Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.926120Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-03T20:58:28.939302Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.939806Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.942351Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-03T20:58:28.971564Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.972054Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.974688Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-06-03T20:58:28.987636Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.988196Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.990816Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-03T20:58:29.003820Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.004436Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.006842Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-06-03T20:58:29.020012Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.020483Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.023320Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-03T20:58:29.084389Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.084914Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.087246Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-03T20:58:29.116624Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.117124Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.120024Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-06-03T20:58:29.381243Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.381823Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.384633Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-06-03T20:58:29.596029Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.596627Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.599352Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-06-03T20:58:29.628375Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.628894Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.631523Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-06-03T20:58:29.660598Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.661111Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.663538Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-06-03T20:58:29.774928Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.774983Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.775434Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.775658Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.778750Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-06-03T20:58:29.779950Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-03T20:58:29.807659Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:29.809136Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.123195Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.123620Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.126284Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-06-03T20:58:30.187275Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.301075Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.301426Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.303969Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-06-03T20:58:30.333164Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.497039Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.497413Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.499918Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-03T20:58:30.529148Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.793287Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.793729Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.796095Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-06-03T20:58:30.825330Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.939126Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.939517Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.941896Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-06-03T20:58:30.971185Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.285232Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.285597Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.288100Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-06-03T20:58:31.317349Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.317608Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.317739Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.317974Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.318400Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.323577Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-03T20:58:31.323789Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-03T20:58:31.348092Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-03T20:58:31.351645Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.351708Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.351735Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.351989Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.352175Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.354716Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-03T20:58:31.355641Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-03T20:58:31.383887Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.383925Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.384080Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T20:58:31.386170Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-03T20:58:31.415635Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:35.584503Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-03T20:58:43.876026Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-03T20:58:43.876026Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] 
[2026-06-03T20:58:43.876026Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-03T20:58:43.876080Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] 
[2026-06-03T20:58:43.876088Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-03T20:58:43.876096Z] [nf-bc32b1e3d114be61c2d0add3ad0b0f54-9790d-cxskl] [753_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec