Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/89/20b357c4cfc49e54bf195d3886be0e/germline_control_1.haplotyper.split.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/69d71ff076ab1b382b753f2860c50a/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/69d71ff076ab1b382b753f2860c50a/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/ddcbe1cab274057158c3883452439b/germline_control_1.mpileup.gz
==> STAGING COMPLETE (4 inputs)

Parsing mpileup: germline_control_1.mpileup.gz
Found 18 positions with indel observations
Annotating VCF: germline_control_1.haplotyper.split.vcf.gz
[E::idx_find_and_load] Could not retrieve index file for 'germline_control_1.haplotyper.split.vcf.gz'
Output written to: germline_control_1.entropy.vcf