[2026-06-03T20:58:24.595670Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-03T20:58:24.610588Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-03T20:58:24.610620Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-03T20:58:24.610625Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-03T20:58:24.610630Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXyGOScI'
[2026-06-03T20:58:24.610634Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-03T20:58:24.610642Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-03T20:58:24.610646Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-03T20:58:24.610649Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-03T20:58:24.610653Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-03T20:58:24.610657Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-03T20:58:24.610660Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-03T20:58:24.610664Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-03T20:58:24.610668Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-03T20:58:24.611342Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-03T20:58:24.611466Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-03T20:58:24.616959Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-03T20:58:24.617583Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-03T20:58:24.617768Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-03T20:58:24.618005Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-03T20:58:24.618268Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.618937Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.619034Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.619107Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.619223Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.619289Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.619594Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.619818Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.619907Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.620149Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.620220Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.620356Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.620773Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.621307Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.621447Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.623129Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.623458Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.623747Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-03T20:58:24.623799Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.623881Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.624073Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.624149Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.624270Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.624343Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.624616Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.624838Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.625261Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.625333Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.625446Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.625513Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.625619Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.625712Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.625821Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.626030Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.626330Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.626391Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.626497Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.626563Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.626676Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.626740Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.626874Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.626935Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.627042Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.627105Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.627211Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.627275Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.627549Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.627926Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.628090Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.628157Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.628263Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.628328Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.628438Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.628502Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.628612Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.628675Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.628787Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.628855Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.628967Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.629093Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.629622Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.629687Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.629795Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.629862Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.644423Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.644767Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.644838Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.645004Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.645076Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.645163Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.645231Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.645340Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.645406Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T20:58:24.645455Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-03T20:58:24.661638Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.662228Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.663487Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.663915Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.664698Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.666963Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.667794Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-06-03T20:58:24.669302Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.670080Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-06-03T20:58:24.670580Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.671414Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.675833Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-06-03T20:58:24.679737Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-06-03T20:58:24.681694Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-06-03T20:58:24.685594Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-06-03T20:58:24.786544Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.787335Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-03T20:58:24.790716Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-06-03T20:58:25.202865Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.203788Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.207491Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-06-03T20:58:25.268521Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.269410Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.273238Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-06-03T20:58:25.285860Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.286675Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.289609Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-06-03T20:58:25.318580Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.319424Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.322619Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-06-03T20:58:25.327547Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.328237Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.331097Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-06-03T20:58:25.360259Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.360350Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.361090Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.361429Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.364515Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-06-03T20:58:25.365785Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-06-03T20:58:25.393517Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.394326Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.397477Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-06-03T20:58:25.426440Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.427265Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.430334Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-06-03T20:58:25.459494Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.460279Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.463828Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-06-03T20:58:25.524576Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.525370Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.528546Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-06-03T20:58:25.557483Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.558255Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.561709Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-06-03T20:58:25.588630Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-06-03T20:58:25.590504Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.590580Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.591258Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.591585Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.594931Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-06-03T20:58:25.595270Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.595705Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-06-03T20:58:25.596062Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.598401Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-06-03T20:58:25.628179Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.628937Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.632140Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-06-03T20:58:25.661261Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.661923Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.665168Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-06-03T20:58:25.726292Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.726399Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.727065Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.727575Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.730790Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-06-03T20:58:25.731558Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-06-03T20:58:25.735463Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.736060Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.738769Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-06-03T20:58:25.768109Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.768204Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.768240Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.768836Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.769131Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.769405Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.772585Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-06-03T20:58:25.773800Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-06-03T20:58:25.774589Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-06-03T20:58:25.802414Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.803627Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.803839Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.803905Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.806134Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.806487Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:25.806700Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-06-03T20:58:25.809937Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-06-03T20:58:25.810609Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-06-03T20:58:26.222208Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.222953Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.225772Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-06-03T20:58:26.287333Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.288018Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.291223Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-06-03T20:58:26.352361Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.353075Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.355646Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-06-03T20:58:26.417132Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.417256Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.417833Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.418339Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.421761Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-06-03T20:58:26.422853Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-06-03T20:58:26.483467Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.484127Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.487653Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-06-03T20:58:26.548628Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.549264Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.552146Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-06-03T20:58:26.613395Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.614043Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.617335Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-06-03T20:58:26.678402Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.678993Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.681947Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-06-03T20:58:26.743133Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.743806Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.747049Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-06-03T20:58:26.808458Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.809099Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.812344Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-06-03T20:58:26.873337Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.873957Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.876785Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-06-03T20:58:26.938325Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.938933Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.942258Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-06-03T20:58:26.942859Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.943288Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.946197Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-06-03T20:58:26.975312Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.975945Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:26.978810Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-06-03T20:58:27.040121Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.040220Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.040250Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.040754Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.041447Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.041939Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.045416Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-06-03T20:58:27.046630Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-06-03T20:58:27.047747Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-06-03T20:58:27.074374Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.075089Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.075397Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.077269Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.078950Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-06-03T20:58:27.079982Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-06-03T20:58:27.109640Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.110179Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.113147Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-06-03T20:58:27.142347Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.143052Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.143395Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.146834Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-06-03T20:58:27.175736Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.375705Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-06-03T20:58:27.390273Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.390336Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.390736Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.391019Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.394238Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-06-03T20:58:27.395169Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-06-03T20:58:27.423429Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.424978Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.539092Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.539595Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.542601Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-06-03T20:58:27.571909Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.786500Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.786972Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-03T20:58:27.790151Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-06-03T20:58:27.851526Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.367108Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.367595Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.370104Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-06-03T20:58:28.399730Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.431723Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.432149Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.434925Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-06-03T20:58:28.464409Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.464661Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.464787Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.465067Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.465477Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.469065Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-03T20:58:28.470211Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-03T20:58:28.471153Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-03T20:58:28.497853Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.497931Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.497955Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.498176Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.498480Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.501231Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-03T20:58:28.524458Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-03T20:58:28.530515Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.530578Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.530773Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T20:58:28.533280Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-03T20:58:28.562865Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:30.280977Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-03T20:58:35.156402Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-03T20:58:35.156402Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] 
[2026-06-03T20:58:35.156402Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-03T20:58:35.156453Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] 
[2026-06-03T20:58:35.156459Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-03T20:58:35.156464Z] [nf-97e08b53e4cb17f1e2263ba5ea836b43-7fdee-gq2b8] [583_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec