cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_Blood.md.bam --read_filter QualCalFilter,table=Sig_18_Blood.table,indel=false --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz Sig_18_Blood.table.post --algo ReadWriter Sig_18_Blood.recalibrated.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:159000001, elapsed 0.1s, est remaining 2.1s, peak mem 329MB, user 0.4s, sys 2.5s, output queue size 8
progress 10% @chr2:75000001, elapsed 0.2s, est remaining 1.8s, peak mem 545MB, user 0.7s, sys 4.9s, output queue size 41
progress 15% @chr2:239000001, elapsed 0.3s, est remaining 1.6s, peak mem 629MB, user 0.9s, sys 7.3s, output queue size 18
progress 20% @chr3:155000001, elapsed 0.4s, est remaining 1.5s, peak mem 763MB, user 1.0s, sys 9.8s, output queue size 18
progress 25% @chr4:114000001, elapsed 0.4s, est remaining 1.3s, peak mem 895MB, user 1.2s, sys 12.2s, output queue size 2
progress 30% @chr5:87000001, elapsed 0.5s, est remaining 1.2s, peak mem 988MB, user 1.4s, sys 14.5s, output queue size 11
progress 35% @chr6:65000001, elapsed 0.6s, est remaining 1.1s, peak mem 1028MB, user 1.6s, sys 16.8s, output queue size 4
progress 40% @chr7:55000001, elapsed 0.7s, est remaining 1.0s, peak mem 1090MB, user 1.8s, sys 19.2s, output queue size 2
progress 45% @chr8:57000001, elapsed 0.8s, est remaining 1.0s, peak mem 1144MB, user 2.0s, sys 21.6s, output queue size 2
progress 50% @chr9:52000001, elapsed 0.9s, est remaining 0.9s, peak mem 1234MB, user 2.3s, sys 24.1s, output queue size 21
progress 55% @chr10:94000001, elapsed 1.0s, est remaining 0.8s, peak mem 1288MB, user 2.5s, sys 26.4s, output queue size 1
progress 60% @chr11:124000001, elapsed 1.0s, est remaining 0.7s, peak mem 1322MB, user 2.7s, sys 28.8s, output queue size 14
progress 65% @chr13:14000001, elapsed 1.1s, est remaining 0.6s, peak mem 1400MB, user 2.8s, sys 31.3s, output queue size 18
progress 70% @chr14:59000001, elapsed 1.2s, est remaining 0.5s, peak mem 1469MB, user 3.1s, sys 33.7s, output queue size 2
progress 75% @chr16:14000001, elapsed 1.3s, est remaining 0.4s, peak mem 1505MB, user 3.4s, sys 36.3s, output queue size 9
progress 80% @chr17:82000001, elapsed 1.4s, est remaining 0.3s, peak mem 1565MB, user 3.5s, sys 39.0s, output queue size 2
progress 85% @chr20:23000001, elapsed 1.5s, est remaining 0.3s, peak mem 1606MB, user 3.8s, sys 41.6s, output queue size 1
progress 90% @chrX:46000001, elapsed 1.8s, est remaining 0.2s, peak mem 2795MB, user 6.6s, sys 43.1s, output queue size 114
progress 95% @chrY:42000001, elapsed 1.9s, est remaining 0.1s, peak mem 2812MB, user 9.0s, sys 43.8s, output queue size 276
progress 100% @chr21:41000001, elapsed 4.2s, est remaining 0.0s, peak mem 2833MB, user 21.9s, sys 45.2s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal ReadWriter
license: sentieon:QualCal=31 sentieon:ReadWriter=31
input file size: 52290597
output file size: 74586797
reads: 1001133
contig: 3367 intervals 3217346917 bases
ReadQualCal::clearEPSVecOne: 8 calls 0.001 user 0.007 sys 0.020 real
ReadQualCal::delayed_init: 1 calls 0.001 user 0.000 sys 0.021 real
ReadQualCal::init: 1 calls 0.000 user 0.000 sys 0.006 real
advance: 3219322 calls 1.470 user 5.429 sys 7.253 real
done: 1 calls 0.404 user 0.207 sys 0.614 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.005 user 0.002 sys 4.242 real
fetch: 3219322 calls 0.346 user 5.530 sys 5.575 real
fetch_reads: 3219322 calls 0.341 user 5.018 sys 5.634 real
fetch_ref: 13318 calls 0.028 user 0.018 sys 0.053 real
fetch_vcf: 13318 calls 1.251 user 0.077 sys 1.384 real
idle: 2244 calls 1.421 user 0.251 sys 89.276 real
init: 1 calls 0.001 user 0.000 sys 0.027 real
update: 13537 calls 6.175 user 1.307 sys 8.083 real
write: 3219322 calls 8.478 user 5.585 sys 14.116 real
overall: 2970742784 mem 26.527 user 46.151 sys 5.568 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 --algo QualCal --plot --before Sig_18_Blood.table --after Sig_18_Blood.table.post Sig_18_Blood.csv
This software is licensed to bgold@natera.com by Sentieon Inc.
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
ReadQualCal::init: 2 calls 0.028 user 0.002 sys 0.027 real
done: 1 calls 0.056 user 0.004 sys 0.057 real
idle: 61 calls 0.002 user 0.000 sys 31.314 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 83587072 mem 0.085 user 0.022 sys 1.054 real