cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta -t 12 --interval chr1_69091-70008.bed.gz -i Sig_18_Blood.recalibrated.bam --algo Haplotyper -d dbsnp_146.hg38.vcf.gz --emit_mode variant germline_control_2.haplotyper.chr1_69091-70008.bed.unfiltered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:18377393, elapsed 0.0s, est remaining 0.7s, peak mem 85MB, user 0.0s, sys 0.1s, output queue size 769
progress 10% @chr1:37761367, elapsed 0.1s, est remaining 0.7s, peak mem 96MB, user 0.1s, sys 0.3s, output queue size 3421
progress 15% @chr1:65405870, elapsed 0.1s, est remaining 0.7s, peak mem 109MB, user 0.1s, sys 0.4s, output queue size 6148
progress 20% @chr1:113837590, elapsed 0.2s, est remaining 0.6s, peak mem 120MB, user 0.2s, sys 0.5s, output queue size 8908
progress 25% @chr1:155247782, elapsed 0.2s, est remaining 0.6s, peak mem 130MB, user 0.2s, sys 0.7s, output queue size 11251
progress 30% @chr1:179102287, elapsed 0.2s, est remaining 0.5s, peak mem 138MB, user 0.2s, sys 0.9s, output queue size 13727
progress 35% @chr1:209836801, elapsed 0.3s, est remaining 0.5s, peak mem 151MB, user 0.3s, sys 1.0s, output queue size 16161
progress 40% @chr1:246907551, elapsed 0.3s, est remaining 0.5s, peak mem 159MB, user 0.3s, sys 1.2s, output queue size 18561
progress 45% @chr2:32549313, elapsed 0.3s, est remaining 0.4s, peak mem 171MB, user 0.3s, sys 1.3s, output queue size 20850
progress 50% @chr2:74461275, elapsed 0.4s, est remaining 0.4s, peak mem 181MB, user 0.3s, sys 1.5s, output queue size 23338
progress 55% @chr2:113499257, elapsed 0.4s, est remaining 0.3s, peak mem 190MB, user 0.4s, sys 1.6s, output queue size 25867
progress 60% @chr2:170954650, elapsed 0.4s, est remaining 0.3s, peak mem 204MB, user 0.4s, sys 1.8s, output queue size 28565
progress 65% @chr2:202765446, elapsed 0.5s, est remaining 0.3s, peak mem 211MB, user 0.4s, sys 1.9s, output queue size 30835
progress 70% @chr2:233798774, elapsed 0.5s, est remaining 0.2s, peak mem 222MB, user 0.4s, sys 2.0s, output queue size 33326
progress 75% @chr3:25612515, elapsed 0.6s, est remaining 0.2s, peak mem 229MB, user 0.5s, sys 2.2s, output queue size 35537
progress 80% @chr3:49804181, elapsed 0.6s, est remaining 0.1s, peak mem 241MB, user 0.5s, sys 2.3s, output queue size 38010
progress 85% @chr3:101860457, elapsed 0.6s, est remaining 0.1s, peak mem 255MB, user 0.5s, sys 2.5s, output queue size 40648
progress 90% @chr3:139582927, elapsed 0.8s, est remaining 0.1s, peak mem 267MB, user 0.5s, sys 2.7s, output queue size 506
progress 95% @chr3:188240450, elapsed 0.9s, est remaining 0.0s, peak mem 274MB, user 0.6s, sys 2.8s, output queue size 2915
progress 100% @chr4:25776277, elapsed 1.0s, est remaining 0.0s, peak mem 283MB, user 0.6s, sys 2.9s, output queue size 5152
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 12 max 192
algo: Haplotyper
license: sentieon:Haplotyper=12
input file size: 74586797
output file size: 22307
reads: 1001133
contig: 49651 intervals 9000373 bases
active: 100735 calls 0.004 user 0.005 sys 0.018 real
advance: 51084 calls 0.013 user 0.013 sys 0.021 real
calc: 100735 calls 0.000 user 0.001 sys 0.018 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.004 user 0.003 sys 2.180 real
fetch: 100735 calls 0.006 user 0.005 sys 0.019 real
fetch_ref: 100735 calls 0.088 user 0.092 sys 0.389 real
idle: 51 calls 0.002 user 0.002 sys 26.142 real
init: 1 calls 0.021 user 0.019 sys 0.041 real
region: 100735 calls 0.005 user 0.005 sys 0.020 real
tracker: 100735 calls 0.017 user 0.003 sys 0.089 real
overall: 297537536 mem 1.223 user 4.511 sys 3.296 real
ls: cannot access '*.g.vcf.gz': No such file or directory
ls: cannot access '*.g.vcf.gz.tbi': No such file or directory