File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/715a970505791374add3affcc2f0c1/.command.err
Size
62.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_1;chr19_15162349-15162662.bed)
Attempt

Content

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[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXX96Oupa/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXX96Oupa/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXX96Oupa/chr19_15162349-15162662.bed.gz.tbi
[2026-06-03T20:58:14.742058Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-03T20:58:14.743235Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-03T20:58:14.743246Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-03T20:58:14.743250Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-03T20:58:14.743255Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXX96Oupa'
[2026-06-03T20:58:14.743258Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-03T20:58:14.743264Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-03T20:58:14.743267Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-03T20:58:14.743271Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-03T20:58:14.743274Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-03T20:58:14.743278Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-03T20:58:14.743282Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-03T20:58:14.743285Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-03T20:58:14.743289Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-03T20:58:14.743929Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-03T20:58:14.744058Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-03T20:58:14.749690Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-03T20:58:14.750457Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-03T20:58:14.750534Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-03T20:58:14.750851Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-03T20:58:14.751171Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.751583Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.751676Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.751748Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.751865Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.751932Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.752051Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.752117Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.752343Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.752980Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.753275Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T20:58:14.753487Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.753697Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.754318Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.754768Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.756445Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.756736Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-03T20:58:14.756963Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.757285Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.757353Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.757539Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.757611Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.757727Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.757796Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.757908Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.757969Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.758084Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.758148Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.758265Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.758447Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.758875Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.758946Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.759077Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.759146Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.759255Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.759318Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.759462Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.759571Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.759687Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.759752Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.759934Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.760060Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.760588Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.760914Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.761546Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.761607Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.761720Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.761782Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.762261Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.762696Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.762872Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.762948Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.763071Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.763136Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.763257Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.763322Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.763437Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.763510Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.763633Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.763783Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.764329Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.764395Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.764511Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.764575Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.764683Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.764753Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.779824Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.780283Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.780358Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.780520Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.780594Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.780829Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.781070Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.781182Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.781254Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-03T20:58:14.782488Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-03T20:58:14.782601Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:14.783375Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:14.783873Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:14.784701Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-03T20:58:14.785112Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:14.786359Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:14.787278Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:14.788456Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-03T20:58:14.790424Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:14.792789Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-06-03T20:58:14.795031Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-03T20:58:14.798298Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-06-03T20:58:14.800628Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-06-03T20:58:14.804347Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-03T20:58:14.805604Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-06-03T20:58:14.809765Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-06-03T20:58:14.811465Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-06-03T20:58:14.907774Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:14.908513Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:14.912178Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-03T20:58:14.973134Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:14.973896Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:14.976472Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-03T20:58:15.689938Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:15.690767Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:15.693835Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-06-03T20:58:16.005435Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:16.006188Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:16.009326Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-03T20:58:16.038286Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:16.039019Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-03T20:58:16.041738Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-06-03T20:58:16.103323Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:16.104022Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:16.106735Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-03T20:58:16.111786Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:16.112432Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:16.114963Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-06-03T20:58:16.144480Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:16.144548Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:16.145172Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:16.145499Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:16.148274Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-03T20:58:16.149353Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-03T20:58:16.209627Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:16.209699Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:16.210341Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:16.210562Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-03T20:58:16.213027Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-06-03T20:58:16.214199Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-06-03T20:58:16.242368Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:16.243036Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:16.245432Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-03T20:58:16.307362Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:16.307451Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:16.308084Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-03T20:58:16.308649Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-03T20:58:16.311462Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-06-03T20:58:16.312469Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-06-03T20:58:16.341145Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:16.341796Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-03T20:58:16.344177Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-06-03T20:58:16.374082Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:16.374737Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:16.377103Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-03T20:58:16.689509Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:16.690230Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:16.692864Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-03T20:58:16.854694Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:16.855391Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-03T20:58:16.858443Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-06-03T20:58:16.969636Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:16.970332Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-03T20:58:16.973400Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-06-03T20:58:17.002829Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:17.003465Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:17.006075Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-06-03T20:58:17.418607Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:17.419327Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:17.422316Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-03T20:58:17.483330Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:17.483979Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:17.486884Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-03T20:58:17.499728Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:17.500334Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-03T20:58:17.502616Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-06-03T20:58:17.532366Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:17.532920Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-03T20:58:17.535379Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-06-03T20:58:17.596880Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:17.597498Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-03T20:58:17.599998Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-06-03T20:58:17.629525Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:17.630121Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:17.632940Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-06-03T20:58:17.794523Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:17.795200Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:17.797926Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-03T20:58:17.827213Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:17.827801Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:17.830536Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-06-03T20:58:17.859666Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:17.860242Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:17.863029Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-06-03T20:58:17.924432Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:17.925023Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-03T20:58:17.927894Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-06-03T20:58:17.957210Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:17.957780Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:17.960983Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-06-03T20:58:18.072041Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.072643Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.075042Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-06-03T20:58:18.104992Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.105565Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.107965Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-06-03T20:58:18.137408Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.137941Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.140409Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-06-03T20:58:18.201999Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.202563Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.205068Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-06-03T20:58:18.234457Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.235007Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.237778Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-06-03T20:58:18.349366Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.350020Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.352891Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-06-03T20:58:18.382002Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.382526Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.385026Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-03T20:58:18.415481Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.416008Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.418625Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-03T20:58:18.448156Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.448228Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.448694Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.448942Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.451507Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-06-03T20:58:18.452375Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-03T20:58:18.481040Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.481120Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.481555Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.482175Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.484616Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-03T20:58:18.485765Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-06-03T20:58:18.514468Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.514977Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.517488Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-06-03T20:58:18.547078Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.547163Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.547598Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.548010Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.550458Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-03T20:58:18.551452Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-06-03T20:58:18.579976Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.580044Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.580470Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.580746Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.583639Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-03T20:58:18.584720Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-06-03T20:58:18.614307Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.614793Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.617090Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-06-03T20:58:18.646735Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.646814Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.647209Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.649713Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-03T20:58:18.679112Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.843467Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.843939Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.846988Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-06-03T20:58:18.908222Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.908680Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-03T20:58:18.911537Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-06-03T20:58:18.972953Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.187477Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.187935Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.190719Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-06-03T20:58:19.251987Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.366284Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.366358Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.366748Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.367280Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.369763Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-06-03T20:58:19.371073Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-06-03T20:58:19.399490Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.399559Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.513665Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.513730Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.514090Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.514347Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.516937Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-06-03T20:58:19.517837Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-03T20:58:19.547635Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.547702Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.547899Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.548019Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.548457Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.548688Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.552354Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-03T20:58:19.553440Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-03T20:58:19.554445Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-03T20:58:19.580929Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.580996Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.581018Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.581208Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.581774Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.584032Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-03T20:58:19.585111Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-03T20:58:19.646759Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.646835Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.647010Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-03T20:58:19.649375Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-03T20:58:19.679023Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-03T20:58:20.444693Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-03T20:58:25.279519Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-03T20:58:25.279519Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] 
[2026-06-03T20:58:25.279519Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-03T20:58:25.279566Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] 
[2026-06-03T20:58:25.279572Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-03T20:58:25.279579Z] [nf-cb715a970505791374add3affcc2f0c1-37ee7-wr757] [582_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec